KEGG   Helicobacter pylori PeCan4: HPPC_05935
Entry
HPPC_05935        CDS       T01322                                 
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
hpc  Helicobacter pylori PeCan4
Pathway
hpc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hpc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HPPC_05935
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hpc03019]
    HPPC_05935
   03016 Transfer RNA biogenesis [BR:hpc03016]
    HPPC_05935
Enzymes [BR:hpc01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     HPPC_05935
Messenger RNA biogenesis [BR:hpc03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     HPPC_05935
Transfer RNA biogenesis [BR:hpc03016]
 Prokaryotic type
  tRNA degradation factors
   HPPC_05935
SSDB
Motif
Pfam: RNase_PH RNase_PH_C KH_1 S1 PNPase S1_2
Other DBs
NCBI-ProteinID: ADO07397
UniProt: E1Q3E9
Position
complement(1210866..1212932)
AA seq 688 aa
MDFITINSSNKTEEFALKQVAKQATSSLMYRLGKTIILASVCVEREPVSEDFLPLVVQFL
EKSYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIEN
DLQVSALNAASAALFLAHIAPIKSVSACRIAKMDNEFIINPSASLLNQSSLDLFVSGTKE
SLNMIEMRSLGQQLNALEEPLMLEALELAQKSLKETCTLYEEAFTPYQNELLFKESEGIA
LNERLLDLLKNQYFDEIIKGIESSALSERENVFKEVARKISEAHSEFSLEEIELSLEKVK
KTEIRRMIIQDKIRPDKRALEEVRPISIESNLLPMAHSSILFTRGQTQSLVVGVLGTDND
AQTHESLEHKTPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKNKE
QVIRLVSEILESNGSSSMASVCAGSLALYASGVEIHDLVAGVAMGMVSEGQDHAILSDIS
GLEDAEGDMDFKIAGNVEGITAMQMDTKMSGIQLEVLYQALLQAKRARKHILKIMHEAKE
KIVINFSHLPTTEIFNVAPDKIVEIIGQGGRVIKEIVEKFEVKIDLNKPSGEVKIMGNKE
RVFKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGLLRKQNMDR
CQVVLKEGDSIRCRVISFNKGKIALDLA
NT seq 2067 nt   +upstreamnt  +downstreamnt
atggattttatcaccatcaattctagtaacaaaaccgaagagttcgctctcaaacaagtg
gccaaacaagccaccagctctcttatgtatcgcttaggaaaaaccatcattttagcgagc
gtgtgcgtagaaagagagcctgtgagtgaagattttctgcctttagtggtgcagttttta
gaaaaatcttatgcagccggaaagatcccgggcggttttgttaaaagagaaggcagggcg
caagattttgaaatcttaacctctaggcttatagacaggactttacgccctttattccct
aaagattaccgctaccctacgcaaatcactttaatggttttaagccatgatattgaaaac
gatttgcaagtttctgctttaaacgccgcttcagccgccctctttttagcccatatcgct
cctattaaaagcgtgagcgcttgcaggatcgctaagatggataacgaatttatcattaac
cctagcgcaagccttttgaatcaatccagtttggatctgttcgtgtccggcaccaaagag
agtttgaacatgatagaaatgcgctctttggggcaacaattaaacgctttagaagagcct
ttaatgctagaagctttagaattggctcaaaaaagtttgaaagaaacctgcacgctttat
gaagaggctttcacgccctatcaaaacgaactcctttttaaagagagcgaagggatagcc
cttaatgaaaggctgttagatttattaaaaaatcagtattttgatgaaatcattaaaggc
attgaaagctctgctttgagcgagcgagaaaatgttttcaaagaagtggctagaaaaatc
agcgaagcccactcagaattcagtttagaagaaattgaattgtctttagaaaaagtgaaa
aaaaccgagatcagacgcatgattattcaagataagatccgcccggataagcgcgcgtta
gaagaagtgcggcccatttcaatagagagcaacttgctccctatggcgcacagctccatt
ttattcactagggggcaaactcaaagcttagtggtaggggttttaggcacggataatgac
gctcaaacccatgagagtttggagcataaaacccctatcaaagagcgcttcatgttccat
tataatttccctcctttttgcgtgggcgaagcgagttctattggcgcgacttcaaggcgc
gaattagggcatgggaatttggctaaaagagccttagaaacgagcattaaaaataaagag
caggtgatacgattggtttctgagattttagaaagcaatggttcaagctcaatggcgagc
gtgtgcgcagggtctttagccctttatgcaagcggtgtggaaattcatgatttagtcgct
ggggtggctatgggcatggtgagcgaagggcaagatcacgccattttaagcgatattagc
ggtttagaagacgccgaaggcgatatggattttaagattgccgggaatgtagaaggcatt
acggctatgcaaatggataccaaaatgagcggtatccaattagaggttttataccaagcc
ttacttcaagccaaaagagcgcgcaaacacattttaaaaatcatgcatgaagcgaaagaa
aagattgtgatcaatttttcccatttgcccacgactgaaatttttaatgtcgcgccagat
aaaattgtagaaattatcggtcaaggggggcgtgtgattaaagagatagtggaaaagttt
gaagttaaaattgatttgaacaaaccgagcggtgaagtgaaaatcatggggaataaagag
cgcgtttttaaaactaaggaatttattttaaactatttgcattctttagatcaagaattg
gagcaatacgctattgatgaggtgctagaagctcaagtgaaacgaatcgtggattttggg
gcgtttttaagcttgcctaaggggggcgaaggcttgttaagaaagcaaaacatggacagg
tgtcaagtggttttaaaagaaggcgatagcatcagatgtagggtgattagtttcaataag
ggtaaaatcgctttggatttggcttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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