KEGG   Homo sapiens (human): 1310
Entry
1310              CDS       T01001                                 

Gene name
COL19A1, COL9A1L, D6S228E
Definition
(RefSeq) collagen type XIX alpha 1 chain
  KO
K24340  collagen type XIX alpha
Organism
hsa  Homo sapiens (human)
Pathway
hsa04974  Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09150 Organismal Systems
  09154 Digestive system
   04974 Protein digestion and absorption
    1310 (COL19A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:hsa00536]
    1310 (COL19A1)
Glycosaminoglycan binding proteins [BR:hsa00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   1310 (COL19A1)
SSDB
Motif
Pfam: Collagen Laminin_G_3
Other DBs
NCBI-GeneID: 1310
NCBI-ProteinID: NP_001849
OMIM: 120165
HGNC: 2196
Ensembl: ENSG00000082293
Vega: OTTHUMG00000014987
Pharos: Q14993(Tbio)
UniProt: Q14993
Position
6q13
AA seq 1142 aa
MRLTGPWKLWLWMSIFLLPASTSVTVRDKTEESCPILRIEGHQLTYDNINKLEVSGFDLG
DSFSLRRAFCESDKTCFKLGSALLIRDTIKIFPKGLPEEYSVAAMFRVRRNAKKERWFLW
QVLNQQNIPQISIVVDGGKKVVEFMFQATEGDVLNYIFRNRELRPLFDRQWHKLGISIQS
QVISLYMDCNLIARRQTDEKDTVDFHGRTVIATRASDGKPVDIELHQLKIYCSANLIAQE
TCCEISDTKCPEQDGFGNIASSWVTAHASKMSSYLPAKQELKDQCQCIPNKGEAGLPGAP
GSPGQKGHKGEPGENGLHGAPGFPGQKGEQGFEGSKGETGEKGEQGEKGDPALAGLNGEN
GLKGDLGPHGPPGPKGEKGDTGPPGPPALPGSLGIQGPQGPPGKEGQRGRRGKTGPPGKP
GPPGPPGPPGIQGIHQTLGGYYNKDNKGNDEHEAGGLKGDKGETGLPGFPGSVGPKGQKG
EPGEPFTKGEKGDRGEPGVIGSQGVKGEPGDPGPPGLIGSPGLKGQQGSAGSMGPRGPPG
DVGLPGEHGIPGKQGIKGEKGDPGGIIGPPGLPGPKGEAGPPGKSLPGEPGLDGNPGAPG
PRGPKGERGLPGVHGSPGDIGPQGIGIPGRTGAQGPAGEPGIQGPRGLPGLPGTPGTPGN
DGVPGRDGKPGLPGPPGDPIALPLLGDIGALLKNFCGNCQASVPGLKSNKGEEGGAGEPG
KYDSMARKGDIGPRGPPGIPGREGPKGSKGERGYPGIPGEKGDEGLQGIPGIPGAPGPTG
PPGLMGRTGHPGPTGAKGEKGSDGPPGKPGPPGPPGIPFNERNGMSSLYKIKGGVNVPSY
PGPPGPPGPKGDPGPVGEPGAMGLPGLEGFPGVKGDRGPAGPPGIAGMSGKPGAPGPPGV
PGEPGERGPVGDIGFPGPEGPSGKPGINGKDGIPGAQGIMGKPGDRGPKGERGDQGIPGD
RGSQGERGKPGLTGMKGAIGPMGPPGNKGSMGSPGHQGPPGSPGIPGIPADAVSFEEIKK
YINQEVLRIFEERMAVFLSQLKLPAAMLAAQAYGRPGPPGKDGLPGPPGDPGPQGYRGQK
GERGEPGIGLPGSPGLPGTSALGLPGSPGAPGPQGPPGPSGRCNPEDCLYPVSHAHQRTG
GN
NT seq 3429 nt   +upstreamnt  +downstreamnt
atgagactcactggcccttggaaactttggctttggatgtcaatatttctgcttcctgct
tccacttccgtgaccgttagggacaagacagaagagtcatgccctatcctgagaatagag
ggacatcagctgacatatgacaacataaacaaacttgaagtttcaggttttgatctagga
gacagcttttctctaagacgtgcattttgtgaaagtgataaaacctgtttcaaattggga
agtgcacttcttattagagacactattaagatatttcccaaaggccttcctgaggagtac
tcagtagctgccatgtttcgagtacgaagaaacgccaaaaaggaacggtggtttctgtgg
caggttttaaaccagcagaatattccacagatttctatagtagttgatggtggaaagaag
gtggtggaatttatgtttcaagccacagagggagatgtgttgaactacatttttagaaat
cgagaactccgtcctttgtttgatcgtcagtggcacaaacttggcattagtatacaatcc
caggtcatttcactttatatggattgtaatttaattgcgaggaggcagactgatgaaaag
gacactgtggatttccatggacggacagttattgctacgcgagcttcagatggcaagcct
gtggatattgaacttcaccaacttaaaatctactgcagtgcaaacctcatagctcaagaa
acatgttgtgaaatatcagatactaagtgcccagagcaggatggctttggaaatattgca
tcatcatgggtaactgctcatgccagtaaaatgtcttcatatctgccagcaaagcaggaa
cttaaagaccagtgccagtgcattccaaacaagggagaagcaggattaccaggagctccg
ggttcacctgggcagaaagggcataaaggagagccgggtgaaaatggtttacatggtgct
ccaggattccctggtcaaaagggagagcaaggttttgaaggcagcaaaggagaaactggt
gaaaagggtgaacaaggagaaaaaggagatccagctctggctggccttaatggagaaaat
ggtttgaaaggtgacttgggtcctcatggtccacctggcccaaaaggagaaaagggagat
acaggacccccaggaccaccagccttacctggttccctggggatacaaggcccccaaggt
ccacctggaaaagagggtcagaggggaagacgagggaaaacaggacctcccggaaaacca
ggacccccaggaccacctggacctcctggaatacaaggaatacaccaaactcttggtgga
tattataacaaggataacaagggaaatgatgaacatgaagctggaggcctgaaaggagac
aagggtgaaactggactaccaggatttccagggtctgttggccctaaaggacaaaaagga
gaacctggagagccttttacaaaaggagaaaaaggagatagaggagaacctggggtaata
ggatcacagggagtaaagggtgaacctggagatcccggaccccctggtttaataggaagc
ccaggactaaagggtcagcaaggatctgcaggctccatgggacccagaggaccgccagga
gatgttggattgccaggagaacatggtatcccaggaaaacaaggcattaaaggagaaaag
ggagatccgggtgggatcataggccctcccgggcttccaggtccaaaaggtgaggctggt
cctccagggaaaagcctgccaggggaaccaggattagatggaaatcctggagcacctggt
ccacgtgggccaaagggtgaaagaggacttccaggtgttcacggttccccaggggacata
ggcccacaagggataggaattcctggcagaacaggcgcccaaggaccagctggagagcca
ggtattcagggtcctcgaggtctccctgggttgccaggaactccagggactccagggaat
gatggagttccagggagagatggaaagccaggcctgccaggccccccaggtgacccgatt
gcacttcctctcttgggagacatcggtgctttgctcaagaatttctgtggcaactgccaa
gccagtgtcccagggctgaaaagcaacaaaggagaagaaggaggtgctggtgagcctgga
aagtatgattccatggcccggaagggtgatatagggccacggggtcctccaggaatccca
ggaagagagggaccaaagggaagcaaaggagagcggggctaccctgggatacctggggag
aaaggcgatgagggtcttcaaggaattccaggcattccaggtgctccaggcccgactgga
ccccctggcttaatgggaagaactggacatcctggtcccacaggagcaaaaggtgaaaag
ggcagcgacggaccccctgggaaacccggaccacctggaccacctggtattccatttaat
gaacgaaacggcatgagcagtttatataaaattaagggaggtgtgaatgttcccagttac
ccagggccacccggtcctcctggcccaaaaggcgatcctggcccagtgggagagcctggt
gcaatggggttgccaggattagaaggatttccaggtgtaaagggagatcgaggcccagca
ggtcccccaggaatagcagggatgtcgggaaaacctggtgccccagggcctccaggagtt
ccaggggaaccgggtgagagaggacctgttggagatataggtttccctggaccagaagga
ccctcaggaaagccaggaataaatggaaaagatggaataccaggtgctcagggcatcatg
ggtaagcctggagacagaggccccaaaggagaacgtggtgatcaggggattccaggagac
agaggctcacaaggtgaacggggaaaaccaggccttacaggcatgaagggggccatcggt
cctatgggtccaccaggaaacaagggctccatgggatcccctggccaccaaggccctcca
ggctctccaggcatccctggcattccggctgatgcagtttcatttgaagaaataaagaag
tatattaatcaagaggtcctaaggatttttgaagagaggatggctgtattcctatcccag
ctcaagctgccagcagcaatgttggctgcccaagcttatgggagacctgggccaccaggg
aaggatgggttgcctgggccaccaggagaccctggaccccaaggctacagaggacagaag
ggagaaagaggtgaacctggaattgggctgccagggagtccaggtcttcctgggacttca
gctctgggtttgccaggctcaccaggtgccccaggcccacagggccccccaggacccagt
ggaagatgtaacccagaagattgcctctatcctgtgtctcatgcccatcagcgcacaggt
gggaattga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Disease (1)   
   OMIM (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   HGNC (1)   
   Ensembl (1)   
   OC (1)   
   PHAROS (1)   
   VEGA (1)   
Protein sequence (12)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (10)   
DNA sequence (30)   
   RefSeq(nuc) (10)   
   GenBank (10)   
   EMBL (10)   
Protein domain (2)   
   Pfam (2)   
All databases (71)   

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