KEGG   Herbaspirillum seropedicae SmR1: Hsero_4320
Entry
Hsero_4320        CDS       T01268                                 
Symbol
rep
Name
(GenBank) ATP-dependent DNA helicase rep protein
  KO
K03656  ATP-dependent DNA helicase Rep [EC:5.6.2.4]
Organism
hse  Herbaspirillum seropedicae SmR1
Brite
KEGG Orthology (KO) [BR:hse00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hse03400]
    Hsero_4320 (rep)
Enzymes [BR:hse01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Hsero_4320 (rep)
DNA repair and recombination proteins [BR:hse03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    Hsero_4320 (rep)
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 Viral_helicase1 AAA_30 AAA_12 ResIII
Other DBs
NCBI-ProteinID: ADJ65789
UniProt: D8IUQ7
Position
4941240..4943312
AA seq 690 aa
MSAPSFGLNKPQSEAVHYMAGPCLVLAGAGSGKTRVITQKIAHLIENCGYESRNIAALTF
TNKAALEMQERIAKLLKDPKQAKHLTVSTFHSLGVKILRQESQHLGLKDRFSIMDSDDCF
SLVQELAVTTDKAIIRGVQNSISLWKNGLVDPDLAEKNARTEDEAQAARIYRSYVATLKA
YQAVDFDDLIRLPVELFRSNEEVRDRWQRKLRYLLIDEYQDTNTCQYELVKLLVTGIGKK
PMFTAVGDDDQAIYAWRGATIENLKLLGVDFPNLHLIKLEQNYRSSTRILQAANAVISNN
PKLFDKTLWSEHGLGDPITVMAMDDEEAEADQIAITLSAHRFERRAKFADYAILYRGNHQ
ARILEKSLRRERIPYVMSGGQSYFDRAEIKDIIAYLRLIANQDDDPAFIRAVTTPRRGVG
QATLEVLGTLAGQWQCSLFEAVYKGGLEDKLTDRQLLPLRKFCDFINALESRATRPGPSG
SGENAGKVLDDMMEAINYEFYLYDSFEERAAQARWQNVVDFINWLKERACGGRDGEGEEK
NLLEITQMVALMSMLEGRDEEQDAVRMSTLHASKGLEFPHVFLVGVEEGILPHKGDPDTP
PEEAAARVEEERRLMYVGITRAQRSLHLSWCKRRKRAKEVIECQISRFVKEMRLDEGEAV
PQESEKITPQARLANLKALLQKPRNTPEQS
NT seq 2073 nt   +upstreamnt  +downstreamnt
atgtccgccccctccttcggcctgaacaagccgcaaagcgaagccgtccactatatggcc
gggccctgcctggtactggccggcgccggttcgggcaagacccgcgtgatcacgcagaag
atcgcccacctgatcgagaactgcggttacgaatcgcgcaacatcgccgcgctgaccttc
accaacaaggccgcgctggaaatgcaggaacgcatcgccaagctgctcaaggaccccaag
caggccaagcacctcacggtctcgaccttccattcgctgggcgtgaagatattgcggcag
gagtcccagcatctggggctgaaggaccgcttttcaatcatggacagcgacgattgtttt
tccctcgtgcaagaactggcggtgaccaccgacaaggccatcatccggggtgtacagaat
tcgatttcgctatggaagaacggcctggtcgatcctgacctggccgaaaagaacgcccgc
accgaggacgaagcccaggccgcgcgcatctatcgcagctatgtggcgaccttgaaggct
taccaggcggtcgatttcgatgacctgatccgcctgccggtggagctcttccgcagcaac
gaggaagtgcgcgaccgctggcagcgcaagctgcgctacctgttgatcgacgaataccag
gacaccaacacctgccagtacgaactggtcaagctgctggtcaccggcatcggcaagaaa
cccatgttcaccgccgtgggtgatgacgaccaggccatctatgcctggcgcggcgcgacc
atcgagaacctgaaactcctgggggtggatttccccaacctgcacctgatcaagctggaa
cagaactaccgctccagcacgcgcatcctgcaggcggccaacgcggtgatctccaacaat
cccaagctgttcgacaagaccctgtggtccgagcacggcctgggcgatccgatcacggtc
atggccatggatgacgaagaagccgaagccgaccagatcgccatcacgctctcggcgcac
cgcttcgagcggcgcgccaagtttgccgactacgccatcctctatcgcggcaaccaccag
gcgcgcatcctggaaaaatcgctgcggcgcgaacgtattccctacgtgatgtcgggcggc
cagagctacttcgaccgcgccgagatcaaggacatcattgcctacctgcgcctgatcgcc
aaccaggacgacgaccctgccttcatccgcgccgtcaccacgccgcgccggggtgtgggc
caggccacgctggaggtgctgggcacgctggccgggcaatggcagtgttcgctgttcgag
gcggtctacaagggcggcctggaagacaagctgaccgaccgccagctgctgccgctgcgc
aagttctgcgatttcatcaacgccctggagtcgcgcgccacccggcccggcccgtcgggc
agcggcgagaacgccggcaaggtgctggacgacatgatggaagcgatcaactacgagttc
tacctctacgacagcttcgaggaacgcgccgcccaggcgcgctggcagaacgtggtggac
ttcatcaactggttgaaggaacgcgcctgcggtggccgcgatggcgaaggcgaagaaaag
aacctgctggaaatcacccagatggtggcgctgatgagcatgctcgaagggcgcgacgaa
gagcaggatgcggtgcgcatgtccaccctgcatgcctccaaggggctggagtttccgcat
gtgttcctggtgggcgtggaagaaggcatcctcccgcacaagggcgaccccgatacgccg
cccgaagaagccgctgcacgggtggaagaagagcgccgcctgatgtacgtgggcatcacc
cgggcgcagcgctcgctgcacctgtcctggtgcaagcgccgcaagcgcgccaaggaagtg
atcgagtgccagatctcgcgcttcgtcaaggagatgcgcctggacgaaggcgaggccgtg
ccgcaggaaagcgagaagatcacgccgcaggcgcgcctggccaatctcaaggcgctgctg
cagaaaccgcgcaatacgccggaacaaagttag

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (30)   

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