KEGG   Hydrogenophaga sp. RAC07: BSY239_2067
Entry
BSY239_2067       CDS       T04455                                 
Name
(GenBank) exonuclease, DNA polymerase III, epsilon subunit family domain protein
  KO
K02342  DNA polymerase III subunit epsilon [EC:2.7.7.7]
Organism
hyr  Hydrogenophaga sp. RAC07
Pathway
hyr03030  DNA replication
hyr03430  Mismatch repair
hyr03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:hyr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BSY239_2067
   03430 Mismatch repair
    BSY239_2067
   03440 Homologous recombination
    BSY239_2067
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hyr03032]
    BSY239_2067
   03400 DNA repair and recombination proteins [BR:hyr03400]
    BSY239_2067
Enzymes [BR:hyr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     BSY239_2067
DNA replication proteins [BR:hyr03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     BSY239_2067
DNA repair and recombination proteins [BR:hyr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     BSY239_2067
SSDB
Motif
Pfam: RNase_T RNase_H_2 DEDDh_C DNA_pol_A_exo1 PAS_4
Other DBs
NCBI-ProteinID: AOF84526
UniProt: A0A1B3LUK0
Position
complement(2179347..2181545)
AA seq 732 aa
MSRRGVDRRVWLGVAVAGAAMLVWMGLTAGIVWSTLDAQERRLLSDLLNPRSTLVAMMIV
VLFGALAFAVRALVGHFVEPVAQLAEEGMVLVRTDVARSLPAQGSPENRAVTGVINQLVA
QRTRLRDDMDARVQEASHNIELEKSRLAALMAELTQSVVVCNLDGRILLYNQRARLQFRA
LSQAPEVAGGAELIGLGRSIYAVFDRKLVAHALENIQQRMLSGATQPSAQFVTSTSVGQL
LRVQMAPVRSSQAQAAEDPADRAELTGFVLMLDNITREFEAESARDQVLHTLTEGTRSAL
ANTQAALDVLDHPDLEPAARERFLRVIREETSALGRRIASIEADAAQSLKTRWPLEDMLG
ADLVSAALRRIEIVTGLPVSALEVNPTLWLKVESFSLLQALVYLAGRLKDEFAVRFVQVR
LEPATGSAGKAQLDLVWSGQAMSNETVMSWEMDTMTSGSESTGLTVRDVVERHGGAFWFE
RERARHQAFFRILLPLADPRDQAEALNFVRSESRPEYYDFDLFKSSEQTRSLDERRLVDL
VYTVFDTETTGLEPSQGDEIIQIGAARIVNGKLLHQECFEQLVDPQRSIPAASIPIHGIQ
PAMVVGQPRIGEVLPAFHAFAQDTVLVAHNAAFDMRFLQLKEKSTGVVFDQPVLDTLLLS
AVIHPNQDSHRLEAIAERFDVPVIGRHTAMGDAMVTAEIFIKLIPLLAQQGIHTLGQARE
AAQKTHFSRLKY
NT seq 2199 nt   +upstreamnt  +downstreamnt
atgagccgccggggcgtggaccgtcgggtgtggctgggcgtggcggtggcgggcgcggcg
atgctggtgtggatggggctgactgcgggcattgtctggtccacgctggatgcacaggag
cgacgcttgttgtccgacctgctgaacccccgcagcacgctggtggccatgatgatcgtg
gtgctgttcggcgcattggcctttgcggtgcgcgccctggtgggccattttgtcgagcca
gtggcccagttggccgaagagggcatggtgctggtgcgcaccgacgtggcccgcagcctg
ccggcccagggcagccccgagaaccgcgccgtcaccggcgtgatcaaccagctggtggcg
cagcgcacgcgcctgcgcgacgacatggacgcgcgcgtgcaggaggccagccacaacatc
gagctggaaaagagccggctggccgcgctcatggccgagctcacgcagagtgtggtggtg
tgcaacctggatggtcgcatcctgctctacaaccagcgcgcacgtctgcagttccgtgcg
ctttcgcaagcacccgaggtggccggaggtgccgagttgatcggcctgggccgctcgatc
tacgcggtgttcgaccgcaagctggtggcgcacgcgctggagaacatccagcagcgcatg
ctctcgggcgcaacccagccctcggcccagttcgtcacgtccacgtcggtgggccagttg
ttgcgcgtgcagatggcccccgtgcgttccagccaggcccaggccgccgaagacccggcg
gaccgtgccgaactcaccggctttgtgctcatgctcgacaacatcacccgcgagtttgaa
gccgagtcggcgcgcgaccaggtgctgcacacgctcaccgaaggcacgcgctcggccttg
gccaacacgcaggcggcactcgacgtgctggaccaccccgatctggagccggccgcgcgc
gaacgctttctgcgggtgatccgcgaagaaaccagcgccttgggtcggcgcatcgccagc
atcgaggcggacgcggcgcaaagcctcaagacccgctggccgctcgaagacatgctgggc
gccgatctggtgtccgccgcgctgcgccgcattgagatcgtgaccggtctgccagtttct
gcgctggaggtgaaccccacgctgtggctcaaggtcgagagcttttcgctgctgcaggcc
ctggtctatctggcggggcggctgaaggacgagttcgcggtgcgttttgtgcaggtgcgt
ctggagccggccacgggcagtgcgggcaaagcccaactcgatctggtgtggtcgggccag
gccatgagcaacgagaccgtgatgagctgggaaatggacaccatgacctcggggagcgaa
tccaccggactcacggtgcgcgacgtggtggagcgccatggcggcgccttctggttcgag
cgcgagcgtgcgcgccaccaggcgttttttcgcatcctgctgccgctggccgatccgcgc
gaccaggccgaagccctcaatttcgtgcgcagcgaaagccggcccgagtactacgacttt
gatctcttcaagagcagtgagcagacccgctcgctcgacgagcgccggctggttgatctg
gtctataccgtgttcgacaccgaaaccaccggactggagccctcgcaaggcgacgagatc
atccagatcggcgcggcgcgcatcgtcaacggcaagctgctgcaccaggagtgttttgaa
cagctggtggatccgcaacgcagcattccggcggcctcgattcccatccacggcattcag
ccggcgatggtggtgggccagcccaggatcggcgaggtgctgccagccttccacgccttt
gcgcaggacactgtgctggtggcgcacaacgccgctttcgacatgcgttttctgcaactc
aaggagaagtccaccggcgtggtgttcgaccagccggtgctcgacacactgctgctctcg
gcggtgatccaccccaaccaggactcccaccggctggaggcgattgctgaacgctttgac
gtgccggtgatcgggcgtcacacggccatgggcgacgccatggtcacagccgagatcttc
atcaagctgatcccgctgctggcgcagcagggcattcacacgctgggacaggcgcgtgaa
gctgcgcagaagacccacttctcccgcttgaagtattga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (24)   

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