KEGG   Ictalurus punctatus (channel catfish): 108258539
Entry
108258539         CDS       T04658                                 
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X1
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
ipu  Ictalurus punctatus (channel catfish)
Pathway
ipu03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    108258539
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ipu03021]
    108258539
   03036 Chromosome and associated proteins [BR:ipu03036]
    108258539
Transcription machinery [BR:ipu03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     108258539
   Coactivators
    SAGA/TFTC/STAGA complex
     108258539
Chromosome and associated proteins [BR:ipu03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     108258539
    STAGA complex
     108258539
    TFTC complex
     108258539
    SAGA complex
     108258539
    SLIK complex
     108258539
SSDB
Motif
Pfam: WD40 TFIID_NTD2 NBCH_WD40 ANAPC4_WD40 Cytochrom_D1 eIF2A
Other DBs
NCBI-GeneID: 108258539
NCBI-ProteinID: XP_017312722
Ensembl: ENSIPUG00000024363
UniProt: A0A2D0Q355
Position
26:17248217..17253019
AA seq 604 aa
MKRGRTEQIQHAVAQYLKRRQYADVDGSLKGAKLSQSAEEMAANLMVQTESSCGNVVSAA
PCQSDPQQYETQFSRLCSFLLEAEAPLGRDVSAVLFPLFLYLHLDMARCGLRGAVDAFFS
RFHSSFQQDAEQRAIVEHLRGVITPQDVASNSKLCSLLDHKYVVHLTDEAYTYLLRYLQS
DDNSALCRVLSTHLQVEVSAVRRSDYQLYGAGLTTGNSTSMSCSGGWSGMDGTEGAESVD
ATAGLPPQNEAALEALQDCVRRVREGPPSLTTVCFYAFENTEQLLNAADVSPDSRLLAAA
FDNSALKLWSLRARKLKAGPRRANVSKIRLACDLVEEETEEEELGSEMKTLRGHSGPVYG
VAFLRDSSGLLSCSEDCTVRYWELRGFSNAAVYRGHAYPVWDVAVSPCGLYFCTASRDTT
ARLWTPARAHPLRLYAGHLADVDCVRFHPNSSYVATGSTDRTVRLWSTQHGGSVRLLTGH
RGPVLALAFSPDGRYLVSAGEDQRLRLWDLASGGVLKELRGHTGAITSLEFSPDSSLIAS
AALDNSVRVWDVRNAHGGGAVPPDGSSPELVGVYTGETSSVLNVRFSACNLLLVTGTAQE
KAEQ
NT seq 1815 nt   +upstreamnt  +downstreamnt
atgaagcgtggccggacggagcagatccagcatgccgtggcgcagtacctgaagagacgg
cagtatgcggacgtggacggttcgctgaaaggggccaagctgtctcaatctgccgaggag
atggcagccaacctcatggttcagacagagtccagctgtgggaacgtggtttccgcagct
ccgtgccagtcagaccctcagcagtatgagactcagttctccaggttatgcagctttctg
ctggaggcagaggcaccgttgggccgggacgtgagtgccgtgctctttcctctcttcctc
tacctgcacctggacatggcacgctgtggcctgaggggtgccgtcgacgccttcttcagc
cgcttccactcctccttccagcaagacgccgagcagagagccatcgtggagcatctccga
ggagtcatcacgccgcaggacgtggcctccaactccaaactgtgctctctgttggatcac
aagtatgtggtgcacctgacagatgaggcctacacttacctgctgcgctacctccagagt
gatgacaacagcgccctctgcagggtgctcagcacacaccttcaggtggaggtttctgct
gtgcgtcgctctgactaccagctctacggggcggggctcactacaggaaactccacctcc
atgtcctgttccggcggctggtctggcatggacgggacagaaggggcggagtccgtagat
gccacagcagggttaccgcctcaaaacgaggccgccttggaggcgcttcaggactgcgtc
cggcgtgtgcgcgagggtcctccgtccctcaccacggtctgcttctacgccttcgagaac
acggagcagctgctaaacgccgcggatgtgtcacccgacagccgcctcctcgccgccgcc
ttcgacaactccgccctcaagctgtggagcctccgagccaggaagctgaaggcagggcct
cgtagggccaatgtgtcgaagatacgcctcgcctgtgacctagtggaggaggagacagag
gaggaggagttgggcagcgagatgaagaccctgcgcggccacagcggcccggtgtacggc
gtggcgttcctgcgagactcctcaggtctgctctcgtgctcggaggactgcacggtgcgg
tactgggagctgcgtggtttcagcaacgctgccgtgtaccgaggccacgcctaccccgta
tgggacgtagcggttagtccatgtggtctgtacttctgcacggcgtcacgcgacaccaca
gcacgcctctggactccggcccgcgctcacccgcttcggctctacgccggacacctggcc
gacgtcgactgcgtgcgcttccacccaaactccagctacgtcgctacgggttcgaccgac
aggaccgtccggctgtggagcacgcagcacggcggctcggtgcgcctgctcacaggacac
cgaggccccgtactggcactcgccttctcgcccgacggcaggtatctggtgtctgcaggt
gaggaccagcggctgcggttatgggacttggcttcaggcggcgtgctgaaggagctgcgt
ggccacacgggcgccatcaccagcctggagttcagcccggacagctcgctcatcgcctcg
gccgctctggataactcggtgcgcgtctgggacgtgaggaacgcccacggcgggggcgcg
gtgcctccggacggctccagccccgagctggttggcgtttacacgggcgagacgagcagc
gtccttaacgtccggttcagcgcctgcaacctgctcctggtcaccggaacagcgcaggag
aaagcggagcagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (49)   
   KEGG ORTHOLOGY (1)   
   RefGene (44)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (6)   
   Pfam (6)   
All databases (65)   

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