KEGG   Ictalurus punctatus (channel catfish): 108259873
Entry
108259873         CDS       T04658                                 
Name
(RefSeq) ATP-dependent RNA helicase DHX33
  KO
K17820  ATP-dependent RNA helicase DHX33 [EC:5.6.2.6]
Organism
ipu  Ictalurus punctatus (channel catfish)
Pathway
ipu04621  NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09150 Organismal Systems
  09151 Immune system
   04621 NOD-like receptor signaling pathway
    108259873
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:ipu03009]
    108259873
Enzymes [BR:ipu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     108259873
Ribosome biogenesis [BR:ipu03009]
 Eukaryotic type
  Other ribosome biogenesis factors
   108259873
SSDB
Motif
Pfam: OB_NTP_bind Helicase_C HA2_C DEAD AAA_22 HA2_N AAA_19 nSTAND3 T2SSE
Other DBs
NCBI-GeneID: 108259873
NCBI-ProteinID: XP_017315125
Ensembl: ENSIPUG00000011594
UniProt: W5U8G7
Position
28:12883110..12895437
AA seq 680 aa
MPHDPDPPPAKKFKPGSPFFPTNKKPGMLLPKKGNAPSTIDVQRKQLPIYQAKSQLIDQL
RQLHNAVLIGETGSGKTTQIPQYLYEAGIGRQGIIAVTQPRRVAAISLAGRVAEEKRTQL
GKLVGYTVRFEDVTSPETKLKFMTDGMLLREAIGDPLLLRYTVVILDEAHERTVHTDVLF
GVVKSAQRKRKEQNKIPLKVIVMSATMDVDLFSQYFNKSPVLYLEGRQHQIQIYYTKQPQ
SDYLHAALVSIFQIHQEAPPSHDILVFMTGQEEIEALARTCRDIAKHLPETCGLMIVIPL
YASLPPAQQLRVFQPAPKGCRKVILSTNIAETSITISGIKYVIDTGMVKAKRYNPDSGLE
VLAVQRVSKAQAWQRAGRAGREDSGSCYRLYTENEFDNLANMTVPEIQRCNLAGVMLQLL
ALGVPDVLNFDFMSKPSPESMRMAGEQLDLLGAVERKDDRVLLTPLGKKMACFPLEPRFA
KTILISPDFSCTEEVLTIISLLSVDSVLYNPPARRDEVLAVRRKFISSEGDHVTLLNIYR
AFKKVSGNREWCRENFVNSRNMGLVAEVRAQLRDICIKLGLKLESSLSELANVRRCLAHG
MFANAAELQPDGTYVALDTHQTVAIHPSSVLFQAKPAYVVFNELLHTSRCYMRDLCLVDA
DWLQEAAPEYFRRKLHTAKS
NT seq 2043 nt   +upstreamnt  +downstreamnt
atgccccacgaccccgatcctcctccggccaagaaatttaagccgggctccccttttttc
cctacaaacaaaaagcctggaatgctgctgccaaagaagggaaatgcgcccagtacaata
gacgtgcaaagaaaacagcttcctatttatcaggccaaatctcagctcatcgaccagctg
agacagctgcacaatgctgtgttaatcggagagacaggctctggaaaaaccacacagatc
cctcagtacctctatgaagctggtatcggtcggcagggcatcatcgcggtcactcagcct
cgacgtgtggctgctatctcgctggcgggacgagtggcagaggaaaagagaactcaactt
ggaaaactggtgggctacacagtacgattcgaggacgtgacctccccagaaaccaagctg
aagttcatgactgatggcatgctgctcagagaggcgatcggagacccgctgcttttgcgc
tacacggttgtgatcctggacgaagctcacgagcgcaccgttcacaccgacgtcctcttt
ggagtggtcaagtccgcccagcgcaaacgcaaagagcagaataagatccctctaaaggtc
attgtgatgtctgccaccatggatgtagacctgttctctcagtattttaataagtctcct
gtgctgtacttggagggtcgacagcaccagattcagatctattacaccaagcagccgcag
tccgattacctacacgcagcgctggtctccatctttcagattcaccaggaagctcctcca
tcccatgacatcttggtgtttatgacgggtcaggaggagatcgaagcgctggctcgtacg
tgtcgggacatcgccaaacacctgcctgaaacctgcgggctcatgatcgtgatccctctg
tacgcatcacttcctcctgcccagcagctcagggtctttcagcctgcacctaagggttgc
agaaaagtcatcctctcaaccaacatcgccgagacgtctataactatttctggaattaaa
tacgtcattgacacaggaatggtgaaggccaagcgctataacccagacagcggtctggag
gtgttggccgtgcagcgggtgtccaaagcgcaggcctggcagcgggcaggcagggcaggg
agagaagactctggctcctgttaccgcctctacaccgaaaacgagttcgacaacctagca
aacatgactgtacctgaaatacaacggtgtaatctggctggtgtaatgctgcagctgctg
gctttgggtgttcctgatgtgctcaactttgacttcatgtccaagccgtcacctgagtcg
atgcgaatggcaggggagcagctggatctcctcggagctgtggagaggaaggacgatcgg
gttttgctcactcctctgggcaaaaagatggcatgctttcccttggaacctcgatttgct
aaaaccatcctgatctctccagacttctcctgtaccgaagaggttctgaccattatctct
ctgctctccgtggactctgtgctctacaaccctcctgcccgccgagacgaggtgcttgcc
gtacgcagaaaattcatctccagtgaaggagaccacgtgaccttgctgaacatctacagg
gccttcaagaaagtcagtggaaatagggagtggtgtagggagaactttgtaaacagccga
aacatgggtctggttgctgaagtccgagcccagctgagagacatttgcattaagctggga
ctgaagctagaatcctcactgtctgaactggctaatgtgcggcgctgcctggcccacggc
atgttcgccaacgccgctgagctacagccagatggcacctatgtggctctggacacccac
cagaccgttgctatccacccgtcttccgtcctgttccaggccaagccggcctacgtggtg
ttcaatgagctcctgcatacatcacgctgctacatgagggacctgtgtctggtggacgcc
gactggttacaggaagcagcgccggagtattttcggcgtaaactccacacggcaaagagc
tag

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (17)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (9)   
   Pfam (9)   
All databases (39)   

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