KEGG   Ictalurus punctatus (channel catfish): 108260706
Entry
108260706         CDS       T04658                                 
Symbol
kdm4c
Name
(RefSeq) lysine-specific demethylase 4C
  KO
K06709  [histone H3]-trimethyl-L-lysine9/36 demethylase [EC:1.14.11.66 1.14.11.69]
Organism
ipu  Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ipu03036]
    108260706 (kdm4c)
Enzymes [BR:ipu01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.66  [histone H3]-trimethyl-L-lysine9 demethylase
     108260706 (kdm4c)
    1.14.11.69  [histone H3]-trimethyl-L-lysine36 demethylase
     108260706 (kdm4c)
Chromosome and associated proteins [BR:ipu03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    108260706 (kdm4c)
SSDB
Motif
Pfam: JmjC zf-HC5HC2H_2 Tudor_2 zf-HC5HC2H PHD_2 JmjN PHD Tudor_5 Rad9_Rad53_bind
Other DBs
NCBI-GeneID: 108260706
NCBI-ProteinID: XP_017316656
UniProt: A0A2D0QGV3
Position
29:2004638..2014275
AA seq 1278 aa
MAGVGANASANPACKIMTFHPTMEEFRDFNKYLVYMESQGAHRAGLAKVIPPKGWKPRRT
YDDIDDLVILAPIQQMVAGQSGLFTQYNIQKKPLSVQEFRRLANSDKYCTPRYLNYEDLE
RKYWKNVTFVPPIYGADVSGTLYDEDVEEWNIGHLNSILDVIEEDCGVSIQGVNTPYLYF
GMWKTSFSWHTEDMDLYSINYLHFGEPKFWYAIPPEHGKRLERLATGFFPNSFKSCEAFL
RHKMTLISPSVLKKYSIPFDKITQEAGEFMITFPYGYHAGFNHGFNCAESTNFASLRWID
YGKVATQCTCSKDMVKISMDPFVRRFQPDRYPAWTQGKDACSIDHTRTTPGSTPELQAWL
QRRRKTRTNKKVSYPCTRSKRLKTVQQPVVVENATARTSDQEEDVKEEEDAKPHNASRLS
GPATLCQQMCFVKVTRVKSNLLAQSSKRVPPPNPQDTAREALGTDEPPNSADEASGTDDT
PDSEETPERFCVAKSSSSKSPNRSCCQEEEEEEEENRSAVNPSSTTVTMETCGFAERSGA
PSSDMPLLTPEVTEDPEGRKSPNLSSEMPFLTLAVQSGDDDMLPNPNGPEDSTPPQNAMG
ETGVCCSKAPYSDWCSNPFREDVGQSLGSDPDANEELLEKSDGDGSASVHTSHHPKASTE
LSSESPSTSYGQNPLDEADFTSSALPNLFGESSTVWKSLSYQNPDVSELAVPYAVWAEPR
CQQVKCPDPSDFPEKSLTFTDLEPSVAHHSGAELLDSPGRPPRSDSSSESGEENSSVSET
EYEDSGIEPGEIRIYTMPTAKRKTTKSWRHPLRKPTARAVPSAVKQQANSDDEPMEECIA
EEELQEADVWARPLVHLWHGRKSHFPSEREYNSAAAKTAPNCAVCTLFMPYYQPEETKDE
SRPEVTMAVREAAARSRPLIPEICFAYREGSCPPNTLLEEDGSSPLVACKHCCVQVHASC
YGVAAHEVTPDWTCDRCSCGDLTAECCLCNLRGGALKRTTDDRWAHVMCAVGLPEAKFTD
VVKRSPVDVSGVPAQRYKLKCIYCHKRMKKLAGACIQCSCGRCPTSFHVTCAHAAGVTME
PDDWPYVVFIICHRHQSRSSSAKSKVSQTELALGQTVIAKHKNLRYYSSRVASVTAQTFY
EVMFDDGSFSNDTFPEDIVSRDCGQLGPPEVSEVVQVKWPDGLFYGAKYLGSNTTYMYQV
EFEDGSQVLAKREDIYTLDEDLPKKVKGRLSTASSMRFEDAFFTTQGERKRQRTPNSRFQ
NDYVADPNPRTSSCSKTN
NT seq 3837 nt   +upstreamnt  +downstreamnt
atggcgggtgtcggggcgaacgcctctgcgaaccccgcgtgtaagatcatgacctttcat
cccaccatggaggagtttcgggattttaacaagtacctggtgtacatggagtctcaggga
gcgcaccgtgccggtctggctaaggtgataccgccgaagggctggaagccgagacgcacc
tacgatgacatcgacgacctggtcatcctggcacccattcagcagatggtggccggccaa
tcggggctcttcactcagtacaacatccagaagaagccgctcagcgtgcaggagtttcgc
aggctggcgaatagtgacaagtactgcacaccccgctacctgaactacgaagacctcgag
agaaagtactggaagaacgtgacgttcgtgccacccatatacggcgcggacgtgagcggg
acgctgtacgatgaggacgtcgaggagtggaacatcgggcacctgaactccatcctggac
gtgatcgaggaagactgcggcgtctccatccaaggcgtgaacaccccctacctgtacttc
ggcatgtggaagacgagcttctcctggcacaccgaggacatggacctctacagcatcaac
tacctgcacttcggagaacccaagttctggtacgccattcctccagaacacgggaagcga
ctggagcgattagccacaggttttttccccaacagctttaagagttgcgaagcgttcctc
cgacacaagatgaccctcatatcgccgtctgtgctgaagaaatacagcatcccgttcgat
aagataacacaagaggccggggagttcatgatcacgtttccgtacggctaccacgccggc
ttcaaccacggcttcaactgcgccgagtccaccaacttcgccagtctgcgctggatcgac
tacggcaaggtcgccactcagtgcacgtgcagtaaggacatggtgaagatctccatggac
ccgttcgtgaggcgtttccaaccggaccgatatccggcgtggacgcagggcaaagacgcg
tgctcgatagaccacacccgtaccacgcccggcagcacgcccgagctccaagcgtggctc
cagagacgccgcaagaccagaaccaacaagaaagtgagctacccttgcacacgctccaaa
cgactgaaaaccgtgcagcagccggtcgtcgtggagaacgcgaccgcgcggacgagcgac
caggaagaggacgtgaaagaggaggaagacgccaaacctcacaacgcgtctcgcctgtca
gggcccgctactctgtgtcaacagatgtgtttcgtcaaggtcacacgagtcaagagcaat
ttattggcccagtcgtctaaaagagtcccgccccccaatccacaagacaccgcgagagaa
gctttaggaaccgacgagcctccaaactcagctgatgaagcttctgggacggatgacacg
ccggactcggaagaaactcctgaacgtttttgtgttgccaaatcctcaagcagcaaatcc
ccaaatcggtcctgttgtcaagaagaagaagaagaagaagaagaaaaccgctctgctgta
aatccctctagtacaacggtcactatggaaacctgcggtttcgcagaacgttcaggagct
ccttcgtccgacatgcctttgcttacgccagaggtgacggaggatcccgagggaagaaaa
tctccgaatctgtcatccgaaatgcccttcctgaccctcgcggtccagtccggtgatgac
gacatgcttccgaatcctaacggaccggaagactccaccccgcctcagaacgcgatgggc
gaaaccggcgtctgctgctctaaagcaccgtattctgattggtgctcaaatccgttccga
gaagacgtcggccaatcgctcgggtctgatccggacgctaacgaggaactcctcgaaaag
agcgacggagacggatccgcatccgtgcatacatcgcatcaccccaaagccagtactgaa
ctttccagcgagtctccttccacgtcttacggccagaaccctctcgacgaagccgacttc
acgtcttctgcgttaccgaacctctttggggaatcctctaccgtctggaagagcctaagc
taccaaaatcccgacgtttccgagctagcggtgccttacgccgtgtgggcggagcctcgg
tgccagcaggtgaagtgccccgatccttccgactttccggagaagagcctgacgtttacc
gatctggaacccagcgtggctcatcattccggggcggagcttctcgattccccgggcagg
cctccgaggtcagacagtagcagcgagtcaggtgaggagaactcctccgtgagcgagacg
gagtatgaagattcgggaatcgagccgggagaaatccgcatctacactatgcccacggcg
aagagaaaaacgaccaaaagttggcgccaccctttgaggaaaccgacagccagggcggtt
cccagcgccgtgaagcagcaagccaacagcgacgacgaacccatggaggagtgtatcgcg
gaggaagaactgcaggaggccgacgtctgggcgagacccctggttcatctctggcacggc
aggaagtctcacttcccgtcggagagagagtacaacagcgcggcggctaagacggcgcca
aactgcgccgtgtgcacgctgttcatgccgtactatcagcccgaagaaacgaaagacgag
agcagacccgaggtcacgatggcggtccgagaggcggcggcgaggtcgcgacctctgatt
cctgaaatatgcttcgcgtaccgcgagggctcgtgtccccccaacacactcctggaggaa
gatggatccagtcctctcgtggcctgtaaacactgctgcgttcaagttcatgccagttgc
tatggcgttgctgctcatgaagtcaccccggactggacatgtgaccgctgttcatgtgga
gatctcaccgctgaatgctgcttatgtaacttgagaggcggcgcgttgaaaagaacgaca
gacgacagatgggcccacgtgatgtgcgccgtgggtcttcccgaggccaaattcaccgac
gtagtgaagcggagtcccgtcgacgtcagcggcgtccctgcacagcgatacaaactgaag
tgcatctattgtcataaacggatgaagaagttagcgggcgcgtgtatccagtgctcctgt
ggccgttgtcccacctccttccacgtcacgtgcgctcacgctgccggcgtcaccatggag
cctgacgactggccgtacgtggtgttcatcatctgccacaggcaccagtcacggagctcc
agcgctaaatcaaaggtgagccaaacagagctggctctgggccaaaccgtgatcgccaag
cacaagaacctgcgctactacagcagccgcgtcgccagcgtcacggcacagacgttctac
gaggtcatgttcgacgacggctcgttcagcaacgacaccttccctgaagatatcgtgagc
agagactgtggtcagctcgggcctccggaggtcagcgaggtcgtgcaggtcaagtggcct
gatgggcttttttatggtgctaaatacctgggctctaacactacatacatgtaccaggtg
gagttcgaggacggttctcaggtgctggctaagagagaggacatctacaccctggacgag
gacctgcccaaaaaggtcaaaggtcgtctctccacagcctccagcatgcgtttcgaggac
gcgttcttcaccacgcagggtgagcgtaagaggcagcgcacaccgaactcgcgcttccag
aacgactacgtggccgacccgaaccctcggacctcgagctgcagcaaaaccaactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (59)   
   KEGG ORTHOLOGY (1)   
   RefGene (55)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (9)   
   Pfam (9)   
All databases (77)   

Download RDF
DBGET integrated database retrieval system