KEGG   Janibacter limosus: EXU32_16560
Entry
EXU32_16560       CDS       T05853                                 
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
jli  Janibacter limosus
Pathway
jli03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:jli00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    EXU32_16560 (recD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:jli03400]
    EXU32_16560 (recD)
Enzymes [BR:jli01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     EXU32_16560 (recD)
DNA repair and recombination proteins [BR:jli03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     EXU32_16560 (recD)
SSDB
Motif
Pfam: AAA_19 AAA_30 UvrD_C_2 AAA_11 Viral_helicase1 UvrD-helicase Helicase_RecD AAA_22 AAA_16 SLFN-g3_helicase SH3_13 Mg_chelatase Herpes_Helicase
Other DBs
NCBI-ProteinID: QBF47711
UniProt: A0A4P6MV78
Position
complement(3438549..3440423)
AA seq 624 aa
MTEILDGYDRRLARTATGELADLNAAGILEAADVHVATRLAELVDESDPLARVTLALTVR
AAREGSTSMAPEHARELLAAGATAGDSGVQGGTEAGGGTARDGESEGNGGIESDGGIEGT
STASPFELPPTDAWLDRVRTSALGEAGVLLVEHGLVYLDRYHREEVQVADDLARRAAAPQ
PSIDAQMLQDGLDRVFAEATWSEQRSAVQAAAGRLTTVLAGGPGTGKTSTVAGLLTLLLE
QAESSGHRPRIALAAPTGKAAARLRESVLGSLAGLPAQDRDRLGSDIEAVTIHRLLGWRP
DSGNRFRRDRRNPLPHDIVIIDEASMLSLTLTARLLEALRPTTRLLLVGDPDQLASVEAG
AVLADLVAGYGESGPVVRLSTSHRFGQEIGELAEAVRVGDADRVLELLDAAAPGGPVEHL
PVDDVLGADEVLRPRLVEHAARLRDLALARRHADALRALGEHRLLCAHRDGPWGVGPWND
RVERWLGETTDYAGRQVLGRPLLVTTNDRGLGLYNGDTGVMSLREDGRVVGVFGEPTAPQ
VHAVSTLGEVDTAHAMTIHKSQGSQARSITVLLPDADSRLLTRELLYTAITRAQESITLV
GSHEAIRAAVTRRTQRATGLRHRV
NT seq 1875 nt   +upstreamnt  +downstreamnt
atgaccgagatcctcgacggctacgaccggcgactggcgcgcaccgcgaccggagagctg
gcggacctcaacgccgccggcatcctcgaggccgccgatgtccacgtcgccacgcgcctg
gccgagctcgtcgacgagagcgacccactcgcgcgggtcaccctcgccctcacggtgcgg
gccgcccgcgaaggctcgacgagcatggcgcccgagcacgcccgtgagctcctcgccgcg
ggagccaccgccggcgactctggagtccagggcggcaccgaggctggcggcgggaccgcg
cgggatggcgagtccgagggtaacggcgggatcgagagtgacggtgggatcgaggggacg
agcacagcctcccccttcgagctgccgcccaccgacgcctggctggaccgggtgcgcacc
agcgccctcggtgaggcgggggtgctgctcgtcgagcacggcctggtctacctcgaccgc
taccaccgcgaggaggtccaggtcgccgacgacctggcccgccgggctgcggcgccgcag
ccgagcatcgacgcgcagatgctccaggacgggctcgaccgggtcttcgccgaggcgacc
tggtccgagcagcggtcggccgtgcaggctgctgccgggcggctcacgacggtcctcgcc
ggcggccccggcaccggcaagacctcgaccgtcgccgggctgctgaccctgctgctcgag
caggccgagtcgagcggccaccggccccgcatcgcgctggccgcgcccacgggcaaggcg
gcggcccgactgcgcgagtcggtcctcggctcgctggccgggctgcccgcccaggaccgt
gaccggctcggcagcgacatcgaggcggtcaccatccaccgcctgctcggctggcgcccc
gacagcggcaaccggttccggcgggaccggcgcaacccccttccccacgacatcgtcatc
atcgacgaggcgtcgatgctctccctcaccctcaccgcacgcctgctcgaggcgcttcgg
cccacgacccggctgctcctcgtcggcgaccccgaccagctggcctcggtcgaggccggc
gcggtgctcgccgacctcgtcgcgggttacggcgagagcggacccgtggtccggctgagc
acctcgcaccgattcggccaggagatcggcgagctggccgaggccgtccgggtcggtgac
gccgaccgggtcctcgagctgctcgatgccgccgctcccggcggcccggtcgagcacctg
cccgtggacgacgtgctcggggccgacgaggtcctgcggcccaggctggtcgagcacgcg
gcccgactgcgtgacctcgcgctggcccgtcggcacgccgacgccctgcgcgccctcggc
gagcaccgcctgctgtgcgcccaccgcgatggcccctggggcgtcggcccgtggaacgac
cgcgtcgagcgctggctcggtgagaccaccgactacgccggacgccaggtcctcggacgc
ccgctgctcgtcacgaccaacgaccgtggcctcggcctctacaacggcgacaccggcgtg
atgtccctgcgcgaggacggtcgggtcgtcggtgtcttcggtgagccgaccgctccccag
gtgcatgccgtctccaccctcggtgaggtcgacacggcgcacgcgatgacgatccacaag
agccagggcagccaagcccggtcgatcaccgtgctgctgcccgacgcggactcccggctg
ctcacccgagagctgctctacacggcgatcacccgcgcccaggagtcgatcacgctcgtg
ggatcgcacgaggcgatccgggcggccgtcacccgccgcacccagcgggcgaccggcctg
cgccaccgggtctga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (13)   
   Pfam (13)   
All databases (22)   

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