KEGG   Kushneria marisflavi: B9H00_10395
Entry
B9H00_10395       CDS       T04840                                 
Name
(GenBank) DNA ligase B
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
kma  Kushneria marisflavi
Pathway
kma03030  DNA replication
kma03410  Base excision repair
kma03420  Nucleotide excision repair
kma03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:kma00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    B9H00_10395
   03410 Base excision repair
    B9H00_10395
   03420 Nucleotide excision repair
    B9H00_10395
   03430 Mismatch repair
    B9H00_10395
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:kma03032]
    B9H00_10395
   03400 DNA repair and recombination proteins [BR:kma03400]
    B9H00_10395
Enzymes [BR:kma01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     B9H00_10395
DNA replication proteins [BR:kma03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     B9H00_10395
DNA repair and recombination proteins [BR:kma03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     B9H00_10395
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     B9H00_10395
   MMR (mismatch excision repair)
    DNA ligase
     B9H00_10395
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      B9H00_10395
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_5 RNA_ligase
Other DBs
NCBI-ProteinID: ART63416
UniProt: A0A240UQK9
Position
2292030..2293772
AA seq 580 aa
MRWQQWMIGIFTLAGLAMPVLAQEGTCPSAEEIEGRLETLAAQIARWDEAYYQRGERLVP
DGVHDQAQTRLTRWRLCLGQPSPTVTLNGGEQRHAIPQTGLNKLPDRAAVHRWMKTLPPG
PLWVQPKVDGVAVTLLYDHGVLVEATSRGNGLTGQDWLDGVIGIDGIPEHLEGVSPERVV
VQGELYLKRIDHVQRRDGTAGARSRVAGLMQRHNPDEQTRNQIGFFAWALPNGPATLAER
HLLLSDWGFMDPQRWSKPVSTIEDVAHWRDYWYRNTLPFASDGVVIKRDVQRPGNVWRNT
PPEESAAWKYPAVATLAEVRNVDFSIGRTGRITPVLELEPVMLGDRTIRRVSAGSLGRWQ
QADIRPGDQVMISLAGLTIPRLDEVVVRNDQRVPLKVPDPERFNALSCLELTEGCHTQFL
ARLTYLSSRNGLDMHGIGEGTWKRLIDAEMVTSLLDWRDVSRATLRSLRGVGEIRAARWR
SAFDQAAQQSLQRLLMALEPAHARFYDSQPKVVFRSADSLNHIVFMRSLKSADWQAMPGL
NSADAATLMAFWHDETVEALLDKWFDKTVPWTREDDAEGS
NT seq 1743 nt   +upstreamnt  +downstreamnt
atgagatggcagcaatggatgataggcatatttaccctggcggggttggcaatgcctgta
ttggcgcaggaaggaacgtgtccatcggccgaggagatcgaggggcgtcttgagacgctg
gccgctcagattgcccgctgggatgaagcctattatcagcgtggcgagcggctggtgcct
gacggtgttcatgatcaggctcagacacggctgacacgctggcgcctttgtctgggacag
ccttcacccacggttaccctgaacggcggcgagcagcgtcatgccatcccacagaccggg
ttgaacaagctgccggatcgggcggcagtccatcgctggatgaagacattaccgccaggg
cctctatgggttcagcccaaggtagacggcgtggcggtgacgcttttgtatgaccacggt
gtgctggttgaggcaaccagtcgcggtaacggcctgaccggtcaggactggctggacggt
gttatcggcattgatggcattccagaacatcttgaaggcgtatcacccgagcgggtggtc
gttcagggagagctctatctcaagcgtatcgatcatgtgcagcgtcgtgatggtacggcc
ggggcgcgctcacgtgtcgccggtttgatgcagcgtcacaatccggacgagcagacgcgc
aatcagattggattctttgcctgggcgctacccaacggcccggcaacgcttgccgagcga
cacctgctgctttccgactggggcttcatggacccgcagcgctggagtaaaccggtcagc
accattgaagacgtggcgcactggcgagactactggtatcgaaacacattgccctttgcc
agcgatggtgtggtgatcaagcgtgatgtccagagacccggcaacgtctggcgcaatacc
ccgcccgaggagagcgcggcgtggaaataccctgcggtcgctacgcttgccgaggtccgc
aacgttgatttcagcatcgggcgcaccggacgcattacgccggtgctggagcttgaaccg
gtgatgcttggagaccgaacgattcggcgggtcagcgccgggtctctggggcgctggcaa
caggccgatatccgcccgggcgatcaggtcatgatttcgctggccgggctgaccattccg
cggcttgatgaggtcgtggtacgtaacgatcagcgggtgccgctgaaggtacccgatccc
gaaaggttcaacgcgctgagctgtctggagttgaccgaggggtgccacacccagtttctg
gctcgcctgacgtatctgagcagccgtaacgggctcgatatgcacggaatcggtgagggc
acctggaaacgattaattgatgccgaaatggtgacgtccttgctcgattggcgggatgta
tcgcgcgctacattgcgctcgttgagaggtgtcggcgagattcgcgccgctcgatggcgt
agcgctttcgatcaggctgcacagcaatcactgcaacgattgctcatggcactggagccc
gctcatgcccgtttttacgactctcaacctaaagtcgtctttcggtcagccgatagtttg
aaccacattgtattcatgcgctcattgaaaagtgctgactggcaggcgatgccgggattg
aacagcgccgacgctgccacactgatggccttctggcacgacgagacagtagaggcgctg
cttgataaatggttcgataaaacagtgccctggacacgggaggatgatgcggagggttcg
tga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (24)   

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