KEGG   Kurthia zopfii: NCTC404_02708
Entry
NCTC404_02708     CDS       T05934                                 
Symbol
helD_2
Name
(GenBank) Helicase IV
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
kzo  Kurthia zopfii
Pathway
kzo03420  Nucleotide excision repair
kzo03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:kzo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    NCTC404_02708 (helD_2)
   03430 Mismatch repair
    NCTC404_02708 (helD_2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:kzo03400]
    NCTC404_02708 (helD_2)
Enzymes [BR:kzo01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     NCTC404_02708 (helD_2)
DNA repair and recombination proteins [BR:kzo03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     NCTC404_02708 (helD_2)
   MMR (mismatch excision repair)
    Other MMR factors
     NCTC404_02708 (helD_2)
SSDB
Motif
Pfam: UvrD-helicase AAA_19 AAA_22 PhoH UvrD_C_2 SLFN-g3_helicase AAA_30 AAA_16 DEAD UvrD_C RNR_N NACHT
Other DBs
NCBI-ProteinID: VEI08097
Position
1:2654008..2656326
AA seq 772 aa
MDAAFQREQQRITEVIQTINNELQQLVGESSQLKNERNDIQKYFWDEVKVNVESFDDYLE
TMIGLRQETQALAVNQSMHRHANKKSSKLRKMKENPYFGRIDFREDREKTADEIYIGIAT
LTDEANDEILIYDWRAPISSIYYESEIGPTYYRTPSHEKIAGQLEKKIQYMIRDGQLQTM
FDASVTIGDEVLQQVLGQSTDKKMHSIVATIQQEQNKIIRHTGSRLLIVHGSAGSGKTSA
ALQRVAYLLYKYRESMTADQIILFSPNTMFNSYVSNVLPELGEENMQQVTFQDYLEHRLG
DTMTLENPYDQLEFILTAKNQAGYEQRLQAIKYKASPTYFEAMERYFETLGEDGMLFHDL
IFNEVVIMTKEELYNQFYSENLGMKLHNRLDLLKESILKRLKETEKKAIKSDWILDEIEL
ISDDRFSKIHQIMAKKKGFRPSEYDEYDLTHRDLAIYLVKRKMNKLRKKINNVDFIDSKT
IYRHLFDWLVQDNLPLWSEIRQDTFRKMDADELYYEDATPFLFMQELMKGFQTNRQIRHL
LIDEAQDYSAFQFEFLKRLFPAANMTVLGDFNQAIFAHAKDTNDFMSLTSLYGEDETAVV
NIQRSYRSTKEIIEFTKGIVPNGESIIAFNRQGKRPVISTHSTEQALHDAISKQIHDYRE
CGYQSIAVICLSDEECTTAYEALSTIPNIKRVKQSTSEYEIGTVVIPSYLAKGIEFDAVI
VYNASSEVYVDDSLRKTFYTVCTRAMHELQIHAIGTVTTLIESIPENRYEIY
NT seq 2319 nt   +upstreamnt  +downstreamnt
ttggatgcagcatttcaacgagagcaacagcgtattacagaagtaattcaaacgatcaat
aatgaactgcaacaactagttggagaatcttcacaacttaaaaatgaacggaatgacatt
cagaaatatttctgggatgaagtaaaagtaaatgtcgaaagcttcgatgactaccttgaa
acgatgattggcttacgtcaagaaacacaggcgcttgcggtgaatcaaagtatgcatcgc
catgcgaataaaaaaagttcgaaacttagaaaaatgaaggaaaatccttatttcggtcga
atcgattttcgtgaagatcgcgaaaaaacggctgatgaaatttatatcggcatcgctact
ctaaccgatgaagcgaatgatgaaattctaatatatgattggcgcgcgcctatttcgagc
atttactatgaatcagaaattgggccgacttactaccgcaccccttctcacgaaaaaata
gcaggtcaattggagaaaaaaatccaatatatgattcgtgatggtcaactgcaaacaatg
tttgatgcctctgtcacgattggtgatgaagtgttacaacaagtacttggccaaagtaca
gacaagaaaatgcatagtattgtcgcaacaattcaacaagaacaaaataaaattattcgc
catacaggtagccgcctactgattgttcacggctctgctggatccgggaagacttctgca
gcacttcaacgtgttgcatacctactatataaataccgtgaatcgatgacggctgatcaa
atcattctattctcgccgaatacgatgtttaatagttatgtgtcgaatgtacttcctgaa
cttggtgaggaaaatatgcaacaagtgacattccaagattatttggaacatcgtttaggt
gacacaatgacattagaaaatccgtatgatcaacttgaatttattttaacggctaaaaat
caagctggctatgaacaaagacttcaagccatcaaatacaaagcttcaccgacttatttc
gaagcaatggaacgctatttcgaaaccttgggtgaagacggtatgctcttccatgatctc
atttttaatgaggtagttattatgacgaaagaagaattatacaatcagttttatagtgaa
aatcttggtatgaaactgcataaccgtctcgatttattaaaagaatcgattttaaaaaga
ttgaaagaaacagagaaaaaagcgattaaatcggattggattctagatgaaattgaattg
atttcagatgaccgcttctctaaaatccatcaaattatggcgaagaaaaaaggattccga
ccttccgaatatgatgagtatgatctgacgcatcgtgacttggcgatttacttagtgaaa
agaaaaatgaataaacttcgtaaaaaaatcaataatgtcgatttcattgattcaaaaaca
atttatcgccatctatttgactggcttgttcaagacaatttaccactttggtcagaaatt
cgccaagatacttttagaaaaatggatgcggatgaattgtattatgaggatgcgacgcca
tttcttttcatgcaagagttgatgaaaggattccaaacgaatcgtcaaataagacattta
ctaattgatgaagcgcaagattattctgctttccaatttgaatttttaaaacgtctattc
cctgctgcgaatatgactgttcttggcgatttcaatcaagcgattttcgcacatgcgaaa
gatacgaatgattttatgtcgcttacttcattgtacggcgaagatgaaacggcagtcgtc
aatattcaacgcagttaccgttcaacgaaggaaattattgagtttacaaaaggaatcgta
ccaaatggtgagtcaatcatcgcattcaatcgccaaggtaagcgccctgtcatttcaact
cattcgacggaacaagcattacatgacgcgatttcaaaacaaattcacgattaccgagag
tgtggctatcaaagtatcgctgtcatttgcctatcagatgaagaatgcacgacagcttat
gaagcattatctactattccaaatattaaaagagtgaagcaaagtacatcggaatatgaa
attgggactgtggtcattccttcctatttagcaaaaggaattgaatttgacgctgtcatt
gtttacaacgcttcttctgaagtctatgtggatgattcacttcgtaaaactttttatact
gtatgtacacgtgctatgcatgaactacaaattcacgcaattggaacagtcacaacatta
atagaaagcattccagaaaatcgttatgaaatctattaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (12)   
   Pfam (12)   
All databases (21)   

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