KEGG   Loxodonta africana (African savanna elephant): 100666322
Entry
100666322         CDS       T04351                                 
Symbol
PRDM9
Name
(RefSeq) histone-lysine N-methyltransferase PRDM9
  KO
K20796  [histone H3]-lysine4 N-trimethyltransferase PRDM7/9 [EC:2.1.1.354]
Organism
lav  Loxodonta africana (African savanna elephant)
Pathway
lav00310  Lysine degradation
lav01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:lav00001]
 09100 Metabolism
  09105 Amino acid metabolism
   00310 Lysine degradation
    100666322 (PRDM9)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:lav03000]
    100666322 (PRDM9)
   03036 Chromosome and associated proteins [BR:lav03036]
    100666322 (PRDM9)
Enzymes [BR:lav01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.354  [histone H3]-lysine4 N-trimethyltransferase
     100666322 (PRDM9)
Transcription factors [BR:lav03000]
 Eukaryotic type
  Zinc finger
   Cys2His2 PRDM
    100666322 (PRDM9)
Chromosome and associated proteins [BR:lav03036]
 Eukaryotic type
  Meiosis-specific proteins
   DSB formation-related proteins
    100666322 (PRDM9)
  Histone modification proteins
   HMTs (histone methyltransferases)
    HKMTs (histone lysine methyltransferases)
     100666322 (PRDM9)
SSDB
Motif
Pfam: zf-H2C2_2 zf-C2H2 PRDM2_PR zf-C2H2_4 zf-C2H2_6 zf-C2H2_jaz SSXRD zf-C2H2_5 Zn_ribbon_SprT SET KRAB Zn-ribbon_8 zf-C2H2_9
Other DBs
NCBI-GeneID: 100666322
NCBI-ProteinID: XP_023397543
Position
Unknown
AA seq 870 aa
MSPARAAKKNPRGDVGSAGRTPTAKDTFRDISIYFSKEEWAEMGEWEKFRYRNVKRNYEA
LVTIGLRAPRPAFMCHRRQAIKAQVDNTEDSDEEWTPRQQVKPPSVASRAEQSRHQKGTP
KALLGNESSLKEVSGTAILLNTTGSEQAQKPVSSPGEASTSDQPSRWKLEPRRNEVEVKM
YNLRERKGLEYQEVSEPQDDDYLYCEKCQNFFIDTCAVHGAPMFVKDSPVDRGHPNHSAL
TLPPGLRIGPSSIPKAGLGVWNEASELPLGLHFGPYEGQVTEDKEAANSGYSWLITKGKN
CYEYVDGKDESWANWMRYVNCARDEEEQNLVAFQYHRQIFYRTCRTIQPDCELLVWYGDE
YGQELGIKWGSRWKKELTSGTEPKPEIHPCPSCRLAFSSQKFLSQHMKHSHPSPPFPGTP
ERKYLQPEDPRPGGRRQQRSEQHMWSDKAEDPEAGDGSRLVFERTRRGCISKACSSLPKG
QIGSSREGNRMMETKPSPGQKANPEDAEKLFLGVGTSRIAKVRCGECGQGFSQKSVLIRH
QKTHSGEKPYVCGECGRGFSVKSVLIKHQRTHSGEKPYVCGECGRGFSVKSVLITHQRTH
SGEKPYVCGECGRGFSVKSVLITHQRTHSGEKPYVCGECGRGFSQKSDLIKHQRTHSGEK
PYSCRECGRGFSRKSVLITHQRTHSGEKPYVCGECGRGFSQKSNLITHQRTHSGEKPYVC
GECGRGFSRKSVLITHQRTHSGEKPYVCGECGRGFSQKSNLITHQRTHSGEKPYVCGECG
RGFSQKSDLITHQRTHSGEKPYVCRECGRGFSRKSNLITHQRTHSGEKPYVCRECRRGFS
VKSALIGHGRRKCSKSAEPLHFPRVSRDQK
NT seq 2613 nt   +upstreamnt  +downstreamnt
atgagccccgccagggcagccaagaagaaccctaggggagatgtggggagcgctgggagg
acgcccacggccaaggacactttcagagacatttccatttacttctccaaggaagagtgg
gcggagatgggagagtgggagaaattccgctacaggaatgtgaaaaggaactacgaggcg
ctggtcactataggtcttagagcccctcgcccagctttcatgtgtcaccgcaggcaggcc
atcaaagcccaggtggataacactgaggattctgatgaggaatggacacctaggcagcaa
gtcaaacctccttcggtggcctcccgggcggagcagagtagacaccagaagggaacgccc
aaggcgctgctaggtaatgaatctagtttgaaggaagtgtcaggaacagcaattttgctg
aacacaactggctcagagcaggcccagaagccggtgtcgtctcctggagaagcaagtacc
tctgatcagccctcgaggtggaaactggagcccaggagaaatgaggttgaggtgaagatg
tacaacctgcgagaaagaaagggcctcgagtaccaggaggtcagtgagccccaggatgac
gactacctttattgtgagaagtgccagaacttcttcattgacacctgtgcagttcatggg
gccccaatgtttgtaaaggacagccctgtagacagggggcaccccaatcactcagccctc
actctgccccctgggctgagaattggaccatccagcatccccaaggctgggctcggagta
tggaacgaggcgtccgagctgccactgggccttcattttggaccctatgagggccaggtg
acagaagacaaggaggcagccaacagcggctactcctggctgatcaccaaggggaagaac
tgctatgagtatgtggatggaaaggacgagtcttgggccaactggatgaggtatgtgaac
tgcgcccgggacgaggaggagcagaacctggtggcctttcagtaccacaggcagatcttc
taccggacctgccgcaccatccagcctgactgtgaactgctggtctggtatggggacgag
tacggccaggagctgggcatcaagtggggcagcaggtggaagaaggagctcacttcaggg
acagaaccaaagccagagatccacccatgtccctcctgccgtctggccttctccagtcag
aaattcctcagccaacacatgaagcacagccacccctctccgcccttcccaggaacacct
gagagaaaatacctccaaccagaggacccccggccagggggtcggaggcagcagcgttct
gagcaacacatgtggagtgacaaagcagaagacccagaggctggagatgggtccagactg
gtgtttgaaaggacaaggcgggggtgtatttcaaaggcctgctccagcctacccaaagga
caaatagggagctctagggagggtaacagaatgatggagacaaagcccagcccaggccag
aaagcgaatcctgaggacgcagagaaattattcctgggggtaggaacctcaagaattgca
aaagtcaggtgtggagagtgtggacaaggctttagccagaagtcagtcctcatcaggcac
cagaagacacactcgggggagaagccctatgtctgcggggagtgtgggcgaggctttagt
gtaaagtcagtcctcatcaaacaccagaggacacactcgggggagaagccctatgtctgc
ggggagtgtgggcgaggctttagtgtaaagtcagtcctcatcacacaccagaggacacac
tcgggggagaagccctatgtctgcggggagtgtgggcgaggctttagtgtaaagtcagtc
ctcatcacacaccagaggacacactcgggggagaagccctatgtctgcggggagtgtggg
cgaggctttagccagaagtcagatctcatcaaacaccagaggacacactcaggggagaag
ccctacagctgcagggagtgtgggcgaggctttagccggaagtcagtcctcatcacacac
cagaggacacactcaggggagaagccctatgtctgcggggagtgtgggcgaggctttagc
cagaagtcaaacctcatcacacaccagaggacacactcaggggagaagccctatgtctgc
ggggagtgtgggcgaggctttagccggaagtcagtcctcatcacacaccagaggacacac
tcaggggagaagccctatgtctgcggggagtgtgggcgaggctttagccagaagtcaaac
ctcatcacacaccagaggacacactcaggggagaagccctatgtctgcggtgagtgtggg
cgaggctttagccagaagtcagatctcatcacacaccagaggacacactcaggggagaag
ccctacgtctgcagggagtgtgggcgaggctttagccggaagtcaaacctcatcacacac
cagaggacacactcaggggagaagccctatgtctgccgggagtgtaggcgaggctttagt
gtaaagtcagccctcattggacatgggagaaggaaatgcagcaagtctgctgaaccttta
cacttcccaagagtgtcaagagaccagaaataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (4)   
   KEGG ENZYME (1)   
   KEGG REACTION (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (47)   
   KEGG ORTHOLOGY (1)   
   RefGene (43)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (13)   
   Pfam (13)   
All databases (79)   

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