KEGG   Lachnospiraceae bacterium oral taxon 500: C3V36_10740
Entry
C3V36_10740       CDS       T05749                                 
Symbol
rnr
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
lbw  Lachnospiraceae bacterium oral taxon 500
Pathway
lbw03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lbw00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    C3V36_10740 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lbw03019]
    C3V36_10740 (rnr)
   03016 Transfer RNA biogenesis [BR:lbw03016]
    C3V36_10740 (rnr)
Enzymes [BR:lbw01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     C3V36_10740 (rnr)
Messenger RNA biogenesis [BR:lbw03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     C3V36_10740 (rnr)
Transfer RNA biogenesis [BR:lbw03016]
 Prokaryotic type
  tRNA degradation factors
   C3V36_10740 (rnr)
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 OB_Dis3 TBPIP
Other DBs
NCBI-ProteinID: AVM70524
UniProt: A0A2R3N3W1
Position
complement(2373139..2375457)
AA seq 772 aa
MIQGEGMNKTEIRKNMVLELLAHSEYKPMKAKEIQALFGIKKRDAAELQEILDELTVGGK
ILQTARGKYMLPVEEWLKTGKYVGHPAGYGFVEVEDLPADIFIPAYRTGGALHGDTVSVR
IFPESAGAGKAAGKRMEGEIVKVLKRGFTQLTGVYQSAKGFGFVVPDIVKIGTDIYIGRG
LSKNAKTGDKVVVQLNSYGVAGEKPRGEILEILGSSASVEVDITAITRSYGLPQEFSEAV
LAEAQKCGLAVPPQEIARRLDLRQELVITIDGEDAKDLDDAVSIRQVGDAFWLGVHIADV
SHYVTEYSELDMEAARRGTSHYLVDRVIPMLPPALSNGICSLNPGEERLTLSCIMQIDRQ
GKVLSHEIRESVIRSSWRMTYTDVAGLLEPERCQPEERERLFRKYETLLPTLRQMAECAA
ILKAAREMRGAIDFDFTEAKFILNPDHSVAEIKAYDRNIATRLIEDFMLIANETVAEHFF
WQGVPFLYRSHGEPKEDKIKELASYLKALDYPFRQRANLHPKDLQRLLAEAEGRPEENII
RRMVLRSMQQARYSDNNEGHFGLSLKYYTHFTSPIRRYPDLQIHRIIKEILTGRWNNARQ
EHYAGRLAGVAVKTSALERQADEAERDVHKLLKAFYMEDHIGESFTGIVSGVNQWGMFVE
LPNTVEGFVAISRLKDDFYEYESAEMALTGARYQRQYRLGDAVEITVLDVDKTRKVVDFS
LYEETVLPEKQSGFKVEEKLAGSEKNGRKPKRTALSKEKRSHREHKKGRGRK
NT seq 2319 nt   +upstreamnt  +downstreamnt
ataatacagggagaaggaatgaacaaaacagaaatcagaaaaaacatggtgctggaactt
ttggcgcattcggaatataagccgatgaaagccaaggaaatccaagcgctgtttggcata
aaaaagcgggatgccgctgagctacaggaaattttagatgaactgacagttggcggcaaa
atcctgcaaaccgcccgcggcaagtatatgctgccggtcgaagaatggctgaaaaccggg
aaatatgtcggtcatcctgccggctacggctttgttgaagtggaggatttgccggccgat
atctttattccggcctaccgtaccggaggcgcgctgcatggcgataccgtcagtgtccgc
atttttccggaatcggccggagcgggaaaggctgccggaaaaagaatggaaggcgagatt
gttaaagttttaaaaagaggctttacgcagctgaccggtgtttatcaaagtgccaagggc
tttggctttgtcgtgccggatatcgttaagatcgggactgacatttatatcggtcggggc
ttaagtaaaaacgccaaaaccggtgataaggtagtagttcagctaaacagctacggcgta
gcgggcgaaaaaccgcggggcgagattttggaaattttagggagctccgcttcggtggag
gttgatattactgccattaccagaagctacggtttgccgcaggagttttccgaagcggta
ttggcggaagctcaaaaatgcggcttggcggttccgccccaggagatcgcccggcggctg
gatttgcggcaggagctggtgattaccattgacggcgaggacgcgaaggatttggatgat
gcagtcagtatccgtcaggtgggcgatgccttttggctgggcgttcatattgccgatgtc
agtcattatgtgaccgagtacagcgagctggatatggaagcggctcggcggggaaccagc
cattatctggtggaccgggtaattccgatgctgccgccggcattgagcaatgggatttgt
tcgctgaatcccggggaggagcggctgacactttcctgcattatgcagattgaccggcaa
gggaaggtgctttctcatgagattagagaaagtgtgatccgctcgtcctggcgaatgacg
tataccgatgtggcggggctgctggagccggagcgctgtcagccggaagaaagagagcgc
ttgttccggaaatatgaaacgctgctgccgactttaaggcaaatggcggagtgtgcggct
attttaaaagcggccagagaaatgagaggggcgattgattttgactttaccgaggccaag
tttattttaaaccctgatcattcggtggctgagattaaagcctatgaccggaatattgct
acccgcctgattgaggattttatgctgattgccaatgaaacggtggccgagcatttcttt
tggcagggtgtgccctttttgtaccgcagtcacggcgagccgaaagaagataaaatcaaa
gaattggcatcttatttaaaagcactggattatcctttccggcaaagggcaaatctccat
cccaaagatttgcagcggctgctggcggaggcggaaggccggccggaggaaaacatcatc
cgccggatggtgctgcgcagtatgcagcaggccagatacagcgataacaatgaaggccat
ttcggattatccttaaaatattacacgcattttacttcgccgattcggcgctatccggat
ttgcagattcaccggattatcaaagagattttaaccggccgctggaataacgctcggcag
gagcattacgccggaagattggccggagtggcggttaagacttcggcgctggaaagacag
gcggatgaagccgaaagagacgtgcataagctgctaaaagccttttatatggaggatcat
atcggcgagagtttcaccggaattgtttccggtgtcaatcaatggggcatgtttgtcgag
ctccccaatacggtcgagggctttgtggccatcagccggttaaaggatgatttttatgaa
tatgaaagtgcggaaatggcattaaccggcgcccgttatcaaagacagtaccgtttgggt
gatgcggttgaaataaccgtgctggatgtggataagaccagaaaagtcgttgatttcagc
ctttatgaagaaacggtgctgccggaaaaacaaagcggttttaaggtcgaggaaaaatta
gcaggctcggaaaagaatggcagaaagccgaaaagaactgctctgtccaaagaaaaacgg
agtcaccgggaacataaaaaaggaagaggcaggaaatga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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