KEGG   Lates calcarifer (barramundi perch): 108874993
Entry
108874993         CDS       T04895                                 
Name
(RefSeq) LOW QUALITY PROTEIN: RNA helicase aquarius
  KO
K12874  intron-binding protein aquarius
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108874993
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:lcf03041]
    108874993
Spliceosome [BR:lcf03041]
 Complex B
  Other components
   Prp19-related factors
    108874993
 Complex C
    108874993
SSDB
Motif
Pfam: Aquarius_N_1st Aquarius_N_2nd AAA_11 AAA_12 Aquarius_N_3rd AAA_19 ResIII AAA_30 DEAD UvrD-helicase UvrD_C_2 SLFN-g3_helicase AAA_16 AAA Parvo_NS1 AAA_22 PhoH DnaB_C nSTAND3
Other DBs
NCBI-GeneID: 108874993
NCBI-ProteinID: XP_018519144
Position
LG19:15573179..15623978
AA seq 1467 aa
MEKETPAKKAAAPSVSQINAEYVTQLANKYWAPHAKNKLPFDTKVMEDVYEKEILKSKFA
IRKIMLLEFSQYLENYLWVNYTPEVSSNAYLMSICCIVNEKFRENVPAWEVFKKEPNHFP
FFFKCVMEAVLAGEEAGLTLKEQTVLLVFLDHCFNSLEVDLIREQVQQLISLPMWMCLIP
SRLQHELKKVPKLQKFWNLIKKKFDKMDADAAEQAKKERVFLSSLIKKFLGVLVSIPPSE
TVSMDKVHYCERFIELMIDLEALLPTRRWFNTVLDDSHLVVSCHLSSLVKREKEGHLFCQ
LLDMLKFYTGFEISDQTGNALTEKEMTTLHYDRITSLQRAAFAHFPELHDFALSNVAAVD
TRESLTKHFGHLSPNTLHQVASYLCLLPELPEGQDTTYEKEVLLELLVSRHERRISQIEQ
LNQMPLYPTEKIIWDENIVPTEYYSGEGCLALPKLNLQFLTLHDYLLRNFNLFRLESTYE
IRQDIEDVVWRMKPWQSEYGGVVFGGWARMAQTITSFSIVEVAKPNIGESWPARVRADVT
VNLNVQDHIKHEWEGLRKHDVCFLITVRPNLPYGTRFDRRQPFVEQTGLVYVRGCEVQGM
LDDKGRVIEEGPEPKPKLRGDVRTFRVWLDPNQYQQDMTSSIQSGTEDPYETFNIIMRRK
PKENNFKAVLETIRNLMNTECVVPDWLHDIILGYGDPGSAHYSKMPNQISTLDFNDTFLS
LDHLRSCFPGHTIKVTEENPELQVPPFRIKFPIXTKTDKGKKRKADEEVEDKEEDLTLVV
EPYVTPNRGPYPYNQPKRNTIQFTPTQIEAIRAGMQPGLTMVVGPPGTGKTDVAVQIISN
LYHNFPEQRTLIVTHSNQALNQLFEKIMALDIDERHLLRLGHGEEELETEKDFSRYGRVN
YVLARRLELLREVGRLQESLDVPGDVSYTCETAGHFYLYQVISRWEEYMSKVRPKGQGKW
QRTAVAAHFPFHKYFSNAPQPVFKGRSYEEDMDIAEGCYRHIKKIFTQLEEFRAFELLRS
GLDRSKYLLVKEAKIIAMTCTHAALKRHDLVELGFKYDNILMEEAAQILEIETFIPLLLQ
NPEDGYSRLKRWIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRFVRLGVPTIDLDAQGRA
RASLCNLYNWRYKHLGNLPHVQQLPEFQVPNPGITFDFQLINVEDFNGVGESEPNPYFYQ
NLAEAEYSVALFMYMRLLGYPADRISILTTYNGQKHLIRDVINQRCAGNPFFGQPNKVTT
VDRFQGQQNDYIILSLVRTKAVGHLRDVRRLVVAMSRARLGLYIFARVSLFQNCFELTPA
FNQLTARPLQLHIRPNEYYSQEQPRDASGQPDQIVKNMPEMANLVYNMYMHMIQTSQKYR
QQQQQSLALPPQQTKTDAVVEKVPVSSGDPQEETPMEQENPEGEASSEPNTEDTSEKEEN
QDTAGHDKMPEHPGRDSDSDGEDSGEE
NT seq 4404 nt   +upstreamnt  +downstreamnt
atggagaaagaaacccccgctaaaaaggctgcagcgccttctgtgtctcagattaacgca
gaatatgtcacacagttggctaataaatattgggctcctcatgcaaagaataaactaccg
tttgatactaaggtgatggaagatgtttatgaaaaagagattctcaagtccaaatttgcc
atcagaaaaattatgctgcttgagttcagccagtaccttgagaattatctttgggtgaac
tacacccctgaggtgtccagcaatgcctacctgatgtccatttgttgcattgtcaatgag
aagttcagagagaatgttccagcctgggaggtattcaagaaggagcccaaccacttccct
ttcttcttcaaatgtgtgatggaagctgtgttggcaggcgaggaggctggcctaactctg
aaggaacaaactgtgctgctggtcttcctggaccactgcttcaacagtctggaggtagat
ttgatcagagaacaggtgcagcagctcatctccctgcctatgtggatgtgcctcatacca
tccagactccaacacgaactaaagaaagttccaaagttgcagaagttctggaatctaata
aagaagaaattcgataagatggatgctgacgcagctgagcaggcaaaaaaagagagagtc
ttcctctcgtctctcattaaaaaatttcttggagtcctcgtgtcaattccaccatcagag
actgtatccatggacaaagtccattattgtgagagattcattgagctcatgattgatttg
gaggccctgctccccaccaggcgttggtttaatacagtgttggatgactctcacttggtg
gtcagctgccacttgtccagcctcgtgaagagagagaaggagggacacctcttctgtcag
ttgttggacatgctgaagttctacacaggcttcgagatcagtgaccagacaggaaacgcc
ctgacggagaaagagatgacaaccctgcactacgacagaatcacctccctgcagagggca
gctttcgctcatttcccagagttgcacgactttgctttgtcaaacgtagcagcagtagac
acccgagaatccttgaccaaacactttgggcatctcagtcccaatactctccaccaggtg
gcctcgtacctatgtctgctaccagaactacctgaagggcaggacaccacctatgagaag
gaggttcttcttgagcttttagtatcacgtcatgagcgcagaatctctcagattgagcaa
cttaaccagatgcccctttatccaacagagaagataatctgggatgagaacattgtcccg
acggagtactactcgggcgaaggctgcctggcactgcctaagctgaatctccagttcctg
accctccatgactacctgttgaggaacttcaacctctttcgtctggagtccacctatgag
atcagacaggatatagaggatgtggtgtggcgtatgaaaccatggcaatcagaatatggc
ggagtggtgttcgggggctgggccaggatggctcagacgatcacctccttttccatagta
gaggttgccaagcccaacatcggagagagctggcctgctcgtgtccgagctgatgtcact
gttaacctcaatgtgcaggatcatatcaagcatgagtgggaagggctgcggaagcacgac
gtttgctttctgatcacggtgcggcccaacctgccctatggcacgcgcttcgaccggcgc
cagccctttgtggagcagactggcctggtgtatgtgagaggctgcgaggtgcagggcatg
ctggatgacaagggacgcgtcattgaggaaggacctgaaccaaagcccaagctgcgagga
gacgtgagaacattccgtgtatggctggacccgaaccagtaccaacaggacatgaccagc
agtattcagagcggcactgaagacccgtatgagactttcaacatcatcatgagacgcaaa
cccaaggagaataatttcaaggcagtgctagagaccatcagaaacctgatgaacacagag
tgtgttgtcccagactggcttcatgacattatcctaggctacggagacccaggcagtgcc
cactattccaaaatgcccaatcagatctccacattggacttcaatgacaccttcctgtcc
ctggaccatttgcgttcatgtttccctggtcacaccataaaagtcacagaggagaatccc
gaactgcaagtcccccctttcagaatcaagttccccatctgaactaaaacagacaaaggg
aagaagaggaaggctgatgaggaagtggaggacaaagaggaagacttgactttggtcgtt
gagccctatgtcacccccaaccgtgggccatatccctacaaccagcccaaacggaataca
attcagttcacgccgactcagattgaagccattcgagctgggatgcagcctggactcacc
atggttgtcggaccaccaggtactggaaagacagatgttgctgttcagatcatctcaaac
ctctaccacaactttcctgagcagaggaccctcatagtcacacattcaaaccaggctctg
aaccagctgtttgaaaagatcatggctcttgacatcgacgagcgtcacctcctgcgtctg
ggccatggagaggaggagctggagaccgagaaggacttcagcagatatggcagagtaaac
tatgtactagccagaaggctggagctcctcagagaggtggggaggttacaggagagcttg
gatgtcccaggagatgtgtcttacacctgtgagactgctggacacttctacctctaccag
gtgatatctcgctgggaagagtacatgagcaaggtcaggcctaaagggcaaggaaagtgg
cagcggacggctgtggctgcacacttccccttccacaagtacttctccaacgccccccag
cctgtcttcaagggtcggtcgtatgaagaggacatggacattgcagagggctgctaccgc
cacatcaagaaaatatttacccagctggaagagttcagggcctttgagctactaaggagt
ggactggaccgctccaagtatctgctggtgaaggaggccaaaatcatcgccatgacctgt
acacacgctgcactcaaacgtcatgacctggtggagctgggattcaagtatgacaacatc
ctgatggaagaggctgctcagattctggagattgagaccttcatccctctattgctgcag
aacccagaggatggctacagcaggctgaaacgttggatcatgattggagaccaccaccaa
ctgccccctgttatcaagaacatggccttccagaagtactccaacatggagcagtctctc
ttcacccggtttgtgcgcctgggagtgcccaccatagatctggatgcgcagggccgtgca
cgtgcgagcctgtgtaatctctacaactggcgctacaaacacctggggaacctacctcat
gtccagcaactgcctgagttccaggtacccaaccctggcataacctttgacttccagcta
attaatgtggaagacttcaatggggtgggagaatctgagcccaacccttacttctatcag
aacctggcggaggcagaatattctgtggctctgttcatgtacatgcgtcttttgggctac
cctgctgaccgcatcagcatcctcaccacctacaatgggcagaaacacctgatcagagac
gtcatcaaccaacgctgcgctggcaatcccttcttcggacagccaaataaggtgacaaca
gtggacaggttccagggtcagcagaatgactacatcatcctctcactggttcggaccaaa
gccgtaggacacctgagggatgtgagacgtctggttgtggccatgtcaagagccagactg
ggcctgtacatctttgcccgggtgtcactgttccaaaactgcttcgagctgactcctgcc
ttcaaccagctcactgccagacctctgcagctgcatatcagaccgaacgagtactacagc
caggaacagcctagagatgcttctggacaaccagaccaaattgtgaagaacatgccagag
atggccaacctggtgtataatatgtacatgcacatgatccagacctcccagaagtacaga
cagcagcaacagcagagcctggctctgcctccgcaacaaaccaagacagatgctgtggtc
gaaaaagtgccagttagctctggggacccgcaggaagaaacccccatggagcaggaaaac
ccagaaggagaggcaagctcagagccaaacactgaggacaccagtgagaaggaagaaaat
caggatacagcaggccacgataagatgccagagcatcctgggagagacagcgacagcgat
ggagaggacagcggggaggagtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (30)   
   KEGG ORTHOLOGY (1)   
   RefGene (26)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (19)   
   Pfam (19)   
All databases (59)   

Download RDF
DBGET integrated database retrieval system