KEGG   Lates calcarifer (barramundi perch): 108882299
Entry
108882299         CDS       T04895                                 
Name
(RefSeq) eukaryotic initiation factor 4A-III
  KO
K13025  ATP-dependent RNA helicase [EC:5.6.2.7]
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf03013  Nucleocytoplasmic transport
lcf03015  mRNA surveillance pathway
lcf03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108882299
  09122 Translation
   03013 Nucleocytoplasmic transport
    108882299
   03015 mRNA surveillance pathway
    108882299
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lcf03019]
    108882299
   03041 Spliceosome [BR:lcf03041]
    108882299
   03009 Ribosome biogenesis [BR:lcf03009]
    108882299
   03012 Translation factors [BR:lcf03012]
    108882299
Enzymes [BR:lcf01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     108882299
Messenger RNA biogenesis [BR:lcf03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     108882299
   mRNA cycle factors
    Stress granule specific factors
     108882299
Spliceosome [BR:lcf03041]
 Complex C
  Other components
   EJC/TREX
    108882299
Ribosome biogenesis [BR:lcf03009]
 Eukaryotic type
  90S particles
   Helicases
    108882299
Translation factors [BR:lcf03012]
 Eukaryotic type
  Initiation factors
   eIF-4
    108882299
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 AAA_22 AAA_30 Flavi_DEAD TniB
Other DBs
NCBI-GeneID: 108882299
NCBI-ProteinID: XP_018530256
UniProt: A0A4W6DI67
Position
LG5:70151..74421
AA seq 406 aa
MAAAGAQGRKRILKEEDMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQ
QRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKV
LLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLV
LDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDE
LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVS
SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI
GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq 1221 nt   +upstreamnt  +downstreamnt
atggctgctgccggggcgcagggcaggaagaggatcctgaaggaggaggacatgaccaag
gtggagtttgagaccagcgaggaggtggacgtcacccccaccttcgacaccatgggcctc
cgggaggacctgctccgcggcatctacgcctacggttttgagaagccgtcagcgatccag
cagagagccatcaaacagatcatcaaaggcagagacgtcatcgctcagtctcagtctgga
acaggaaagacggccactttctgtgtgtcagtgctgcagtgtctggacatccaggtgagg
gagacccaggctctgatcctcgctccaaccagagagctggccggacagattcagaaggtg
ctgctggctctgggagactacatgaacgttcagtgtcacgcctgtatcggagggaccaac
gtgggtgaggacatcaggaagctggactacggtcagcacgtggtcgccgggacacctgga
cgagtgtttgatatgattcgccgcaggagtctgaggacaagagcgatcaagatgctggtc
ctggacgaggccgatgagatgctgaacaaaggttttaaggagcagatctatgacgtgtac
cgttacctgccccccgccactcaggtggtcctgatcagcgccacgctgccacacgagatc
ctggagatgaccaacaagttcatgacagacccgatccgaatcctggtcaaacgagacgag
ctgaccctggaggggataaagcagttcttcgtggccgtggagagggaggagtggaagttc
gacactctgtgtgatctgtatgacactctgaccatcactcaggccgtcatcttctgcaac
accaagaggaaggtggactggctgacggagaagatgagggaggcgaacttcacggtgtcg
tcgatgcatggagacatgccgcagaaagagagggagtccatcatgaaggagttcagatca
ggagccagtcgtgtgttgatctcaacggacgtttgggctcgaggtctggacgttcctcag
gtttctctgatcatcaactacgacctgcccaacaacagagagctctacatccacaggatt
ggtcgatccggccgttacggtcgtaaaggtgtggccattaactttgtgaagaacgacgac
atcaggatcttgagagacatcgagcagtactactccacccagattgacgagatgcccatg
aacgtggctgacctgatctga

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Ontology (5)   
   KEGG BRITE (5)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (310)   
   KEGG ORTHOLOGY (1)   
   RefGene (306)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (8)   
   Pfam (8)   
All databases (335)   

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