KEGG   Lates calcarifer (barramundi perch): 108886531
Entry
108886531         CDS       T04895                                 
Symbol
cacna1da
Name
(RefSeq) calcium channel, voltage-dependent, L type, alpha 1D subunit, a
  KO
K04851  voltage-dependent calcium channel L type alpha-1D
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf04010  MAPK signaling pathway
lcf04020  Calcium signaling pathway
lcf04218  Cellular senescence
lcf04260  Cardiac muscle contraction
lcf04261  Adrenergic signaling in cardiomyocytes
lcf04270  Vascular smooth muscle contraction
lcf04530  Tight junction
lcf04912  GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    108886531 (cacna1da)
   04020 Calcium signaling pathway
    108886531 (cacna1da)
 09140 Cellular Processes
  09143 Cell growth and death
   04218 Cellular senescence
    108886531 (cacna1da)
  09144 Cellular community - eukaryotes
   04530 Tight junction
    108886531 (cacna1da)
 09150 Organismal Systems
  09152 Endocrine system
   04912 GnRH signaling pathway
    108886531 (cacna1da)
  09153 Circulatory system
   04260 Cardiac muscle contraction
    108886531 (cacna1da)
   04261 Adrenergic signaling in cardiomyocytes
    108886531 (cacna1da)
   04270 Vascular smooth muscle contraction
    108886531 (cacna1da)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04040 Ion channels [BR:lcf04040]
    108886531 (cacna1da)
Ion channels [BR:lcf04040]
 Voltage-gated cation channels
  Calcium channel, voltage-gated (Cav)
   108886531 (cacna1da)
SSDB
Motif
Pfam: Ion_trans CAC1F_C Ca_chan_IQ GPHH PKD_channel FAM176
Other DBs
NCBI-GeneID: 108886531
NCBI-ProteinID: XP_050930373
Position
LG12:complement(23425089..23480385)
AA seq 2078 aa
MSANGPAPDPAPAAPEAPPASTPAPAPAPAPAAPPAPPAPPAPAATTIPAGALAQKKRQQ
YAKSKKQGSNANSRPPRALFCLNLNNPIRRACISLVEWKPFDIFILIAIFANCMALAVYV
PFPEDDSNSTNHDLETVEYAFLIIFTIETFLKIIAYGLVMHQNAYVRNGWNMLDFVIVVI
GLFSVVLELLTKDEKTEGDGESSHPSMHGHGGKPGGFDVKALRAFRVLRPLRLVSGVPSL
QVVLNSIIKAMVPLLHIALLVLFVIIIYAIIGLELFIGKMHATCYMAGSDAIAEEEPAPC
AISGHGRQCPMNGTECREGWQGPNGGITNFDNFLFAMLTVFQCITMEGWTDVLYWMNDAM
GFELPWVYFVSLVIFGSFFVLNLVLGVLSGEFSKEREKAKARGDFQKLREKQQLEEDLKG
YLDWITQAEDIDPDNEDEADEESKRNPSVPASETESVNTENQNGEDEKTPCCGPLCQKIS
KSKFSRRWRRWNRFCRRKCRLAVKSVPFYWLVIILVFLNTLTISSEHYNQPLWLTQVQDV
ANKVLLALFTCEMLVKMYSLGLQAYFVSLFNRFDCFVVCGGITETILVELEIMSPLGISV
FRCVRLLRIFKVTRHWQSLSNLVASLLNSMKSIASLLLLLFLFIIIFSLLGMQVFGGKFN
FDETQTKRSTFDNFPQALLTVFQILTGEDWNAVMYDGIMAYGGPSSSGMIVCFYFIILFI
CGNYILLNVFLAIAVDNLADAESLNTDEGDKKGDKKDDEKDEKDEEEDNDDTAAEEEDPE
VPSGPRPAISELVKKEKITPIPEGSAFFIFSSTNPVRVFCHRLINHHIFTNLILVFIMLS
SVSLAAEDPIRNFSARNIILGYFDYAFTAIFTVEIVLKMTTYGAFLHKGAFCRNYFNLLD
LLVVGVSLVSFGIQSSAISVVKILRVLRVLRPLRAINRAKGLKHVVQCVFVAIRTIGNIM
IVTTLLQFMFACIGVQLFKGKFYRCTDEAKSSPEECKGTYILYKDGDVNQPTIHKRLWHN
SDFNFDNVLMAMMALFTVSTFEGWPALLYKAIDSNRENLGPIYNYRVEISIFFIIYIIII
AFFMMNIFVGFVIVTFQEQGEKEYKNCELDKNQRQCVEYALKARPLRRYIPKNPYQYKFW
YVVNSTGFEYIMFVLIMLNTLCLAVQHYGQSATFNYVMDILNMVFTAVFTVEMVLKLIAF
KPRGYFGDAWNVFDALVVIGSIVDIVLSEIDNTEDSARISITFFRLFRVMRLVKLLSRGE
GIRTLLWTFIKSFQALPYVALLIAMLFFIYAVIGMQVFGKIAMVDGTHINRNNNFQTFPQ
AVLLLFRCATGEAWQEIMLACMPGKLCDPESDYNPGEEMTCGSGFAIVYFITFYMLCAFL
IINLFVAVIMDNFDYLTRDWSILGPHHLDEFKRIWSEYDPEAKGRIKHLDVVTLLRRIQP
PLGFGKLCPHRVACKRLVAMNMPLNSDGTVMFNATLFALVRTALKIKTEGNLEQANEELR
AVIKKIWKRTSMKLLDQVVPPAGDDEVTVGKFYATFLIQDYFRKFKKRKEEGLVGAHPSQ
NNTAIALQAGLRTLHDIGPEIRRAISCDLQDDELVDFIPEEDEEIYRRNGGLFGNHLMNG
GHRRSNGHQTNATQRPLQVQPPPHYAHMEQPVGRLSRANAMSHPNHHHHHHHHHHRHHNS
YGKSPKSTNINLNNANVSSLPNGGHHRYYEHAPPNGYPGLRSSYYDYDKPRTPQGQRRRY
YETYVRSHAGDGRHPTIRREEEFDEDRFSGEYYSGEEFYEDDSMLSGDRYQNSDTEYETP
KGYHHPDSYYDDDEQPLYRDSRRSPKRRLLPATPQGHRRPSFNFECLRRQSSQDELPHQR
TALPLHLMQHQVMAVAGLDSSRAHRLSPTRSTRSWATPPATPASKDQSPYYTPLIRVDHP
HRGSAASSQVSVRKSSWYTDDPEFSQRTYSPVHLQVPPEYHNQYHQKRGSATSLVEAVLI
SEGLGRYAKDPKFVAATKHEIADACEMTIDEMESAASHLLNGGMAPGVNGVNVFPLLTPR
DYELQDTAASYSDEEPETEPRAPYEEDLADEMICITTL
NT seq 6237 nt   +upstreamnt  +downstreamnt
atgagcgccaacgggcccgccccagacccagcccccgcagccccagaagccccacctgcc
tccacccccgcccctgctccggccccagccccagcggcaccacccgctcctcctgccccg
cctgccccagcagccactaccatcccggcaggtgcgttggcacagaagaagcggcagcag
tatgccaaaagcaagaaacagggcagtaacgccaacagcaggccaccgagggctctgttc
tgcctcaacctcaacaaccccatacgcagggcctgcatcagcctggtggagtggaagcca
tttgatatctttatattaattgctatttttgccaactgtatggccttagctgtctatgtc
cccttccctgaagatgattccaactccactaaccatgatctggaaacagtcgagtatgcc
ttcctcatcattttcacaattgagacctttctgaagattatcgcttatggtttggtgatg
caccagaacgcgtatgtgagaaacggttggaacatgctggatttcgtcattgttgtcata
ggactcttcagtgttgtcttggagcttttgaccaaagatgagaaaacagaaggtgacgga
gagagtagccatccgtcgatgcacgggcatgggggtaaaccaggtggatttgacgttaaa
gcccttcgagccttccgtgtgctgcgacccctgcggctggtctcaggagtacccagttta
caggtggtgttgaactccatcattaaagccatggtccctctccttcacattgccctcctg
gtcttgtttgtcattatcatctatgctattatcggcctggagctgttcattggcaaaatg
cacgcaacctgctatatggctggctcagatgcgatagcagaggaagaaccagctccatgt
gcgatctcagggcatgggcgccaatgccccatgaacggcaccgagtgcagggaaggctgg
caaggtcccaacggtggcatcaccaactttgacaacttcctgtttgccatgctgacagtg
tttcagtgcatcaccatggagggctggactgacgtgctgtactggatgaatgacgctatg
ggctttgagcttccatgggtgtactttgtcagtcttgtgattttcggctcctttttcgtc
cttaacctggttttgggtgtgttgagcggagagttctccaaggagagagaaaaggccaaa
gctcgcggcgacttccagaagctgcgtgagaagcagcagctggaggaggatctgaagggt
tacctggactggatcactcaggccgaggacatcgaccccgacaacgaggacgaggccgat
gaggagagcaagcgcaacccgagcgttccagccagcgaaacagaatccgtgaacacagag
aatcaaaacggggaggatgaaaagacaccatgctgcggacctctgtgtcaaaaaatttcg
aagtcaaagttcagtcggcgctggcgccgctggaacaggttttgccgcaggaagtgccgg
ttggctgtcaaatcggtgcctttctattggctggtcatcatcctggtgttcctcaacacc
ctcaccatatcatcagagcattataaccagccgctgtggctgacacaagtgcaggatgtg
gccaacaaggtgctgttagccctgttcacatgtgaaatgttggtgaagatgtacagtctg
gggcttcaggcttatttcgtttcactgttcaaccgctttgactgcttcgtggtatgcgga
ggaatcactgaaaccattctggtcgaattggaaatcatgtctcccctcggtatctccgtg
ttccgctgtgtccgcctgctgaggatcttcaaggtcacgcgtcactggcaatctctgagt
aacctggtggcatccttgcttaactccatgaagtccatcgcttccctgctgctgctgctc
ttcctcttcatcatcatcttctccctgctgggcatgcaggtgttcggaggaaagttcaac
tttgacgaaacgcagaccaagaggagcacctttgacaattttccccaagctctcctcact
gtgtttcagatcctgactggtgaagactggaatgctgttatgtacgatgggatcatggcg
tacggaggtccttcctcttccggaatgatcgtgtgcttttacttcatcatcctcttcatc
tgtggaaactatatcctgctgaatgtcttcttggctatcgctgtggacaacttggcagat
gcagagtctctcaacacagacgaaggagacaaaaaaggggacaaaaaggatgacgaaaaa
gatgagaaggatgaggaggaggacaatgatgacacagcagcggaggaagaggatccagaa
gtaccatcggggcctcggccggccatctctgagctggtaaagaaggagaagatcactcct
atcccagagggaagtgccttcttcatcttcagcagcacaaacccggtgcgcgtgttttgc
cacagactcatcaatcatcacatcttcaccaacctcatcctggtgttcatcatgctcagc
tctgtctcactcgctgctgaggatccaatacgaaacttctcagctcgcaatattatactt
ggttactttgactatgctttcacggctatctttactgttgagatcgttttgaagatgaca
acctatggggcttttctgcataaaggagcattctgtaggaattacttcaacctccttgac
ctgttggtggtgggagtttcccttgtctcattcggcattcagtcctctgccatctctgtg
gtgaagattcttagggtccttcgtgttcttcggcccctcagggccatcaacagagctaaa
ggcctgaagcacgtggtgcagtgtgtgttcgtggccatcagaaccatcggtaacatcatg
atcgtcaccacactgcttcagttcatgttcgcctgtataggagtgcagctatttaaggga
aagttctatcgctgcacagatgaagccaagtccagcccagaggagtgcaagggtacctac
atcctgtataaggatggagatgtgaaccagccaaccatccacaaacgactgtggcacaac
agcgacttcaactttgacaacgtcctcatggctatgatggctctgttcactgtgtccact
tttgaaggctggcctgcgttactgtacaaggccattgactccaacagggagaaccttggc
cccatctacaactaccgcgtggagatttccatcttcttcatcatctacatcatcatcatt
gctttcttcatgatgaacatcttcgtaggttttgtgatcgtcacatttcaggaacaagga
gagaaagagtacaaaaactgtgaacttgacaagaaccagcgtcagtgtgtggagtatgct
ctcaaagctcgtccgctgaggaggtacattcctaagaacccataccagtacaagttctgg
tatgtggtgaactccactgggtttgagtacatcatgtttgtgctcatcatgctcaacaca
ctctgcctggctgtacagcactatggccagtcagcgacatttaactacgtaatggacatc
ctcaatatggtcttcactgctgtcttcactgtggaaatggttctcaaactcatcgctttc
aaacccaggggctattttggggatgcctggaacgtgttcgacgccctggttgtgattggc
agcatagtagacattgttctcagtgaaatcgataacacagaggacagcgctcgcatctcc
atcaccttctttcgtctgtttcgagtcatgcggctggtaaagctcctcagcagaggggaa
ggcattcgcaccctgctttggactttcatcaaatccttccaggctctgccgtatgttgct
cttctgatcgccatgctgttcttcatctacgccgtcattggcatgcaggtgtttggaaag
atcgcaatggtggatggcacacacatcaacagaaacaacaacttccagaccttccctcag
gccgtgctccttctcttcaggtgtgccactggagaggcgtggcaggagatcatgttggcc
tgtatgcccgggaaactgtgtgacccagagtccgactacaaccctggggaggagatgaca
tgtggcagtggatttgcaatagtttacttcatcaccttctacatgctctgcgccttcttg
attatcaatttgtttgtggctgtcatcatggacaactttgactatcttacacgtgattgg
tccattcttggtcctcaccaccttgacgaattcaagagaatttggtcagagtacgaccca
gaggccaaaggcagaattaagcacctggatgttgtaacgcttctccgtcgtattcagcct
ccactcggctttggcaaactgtgccctcacagagtggcttgcaagaggctggtagccatg
aacatgcctctgaacagtgacggcacagtcatgtttaatgccactctgtttgcgctggtg
cgaacagccctgaagatcaaaacagaaggtaatctagagcaggccaacgaagagctgcgg
gctgtcatcaagaaaatctggaagagaaccagcatgaagctgctggatcaagtggtgcct
cctgctggtgatgatgaggtaaccgtggggaagttctatgccaccttcctgatacaggac
tactttaggaaattcaagaaacgtaaagaggaaggcctggtgggtgctcacccctcccag
aacaacacggccattgctttacaggctggccttcgcacgctgcatgatattgggcccgaa
attcgccgagcgatatcatgtgatctgcaagatgacgaactagtagactttattccagag
gaagacgaggaaatttataggcgtaacggcggactctttggtaaccatctcatgaatggt
ggtcatcggcgatccaatggccatcagaccaacgccacacagcgacccctgcaggtccag
cctccaccacactacgcccacatggagcagccggtgggacgcctgtctcgagccaacgcc
atgtcccaccccaaccaccatcatcaccaccaccaccatcaccaccgccaccacaactcc
tacggcaagtctcccaagtctaccaacatcaacctcaacaatgccaacgtgtccagtctg
cccaacggaggacaccatcgctactatgagcacgcgcctcccaatggttacccaggtcta
cgcagctcctactacgactacgacaagccccggacaccccagggtcaaagaaggcgctac
tatgagacctatgttaggtcccatgcaggggatggacgccaccccaccatccgcagggag
gaggagtttgatgaagatcgcttctctggggagtattacagcggggaggagttttatgaa
gatgacagtatgctgtcaggggacaggtatcagaacagtgacacagagtatgagactccc
aaaggttaccatcaccctgacagttactatgacgatgatgagcagcctctctaccgcgac
tcacggaggtcaccaaagagacggctgcttcctgccacacctcaaggtcacaggaggcca
tccttcaactttgagtgtctgcgcagacaaagtagccaggacgagcttccacatcagcgt
actgctctaccactgcaccttatgcagcaccaggtaatggctgtagcaggcctggactcc
agcagagcccaccgcctctccccgacccgctccacccgctcctgggcgactccccctgca
accccggccagtaaagaccagtcaccatactacacccccctcatccgcgtggaccaccca
cacagggggagtgctgctagcagccaagtgtctgtacgcaagagctcctggtacacagat
gaccccgaattctcccagaggacgtactcgcctgtccacctgcaggtgccgcctgagtac
cacaaccagtaccaccaaaaaagaggcagcgccaccagccttgtggaagcggttttgata
tcagaagggcttgggagatacgccaaggatcccaagttcgtcgctgccacaaagcacgag
atagcagatgcgtgtgagatgacgatagatgagatggagagtgcagccagccacctgctg
aacggagggatggccccgggcgtcaatggggtcaatgtgtttcccctactgactccaagg
gactatgaactgcaggacaccgcagccagctacagcgatgaggagccagagacagaaccc
agagctccttacgaggaggacctggcagacgagatgatctgcatcacgactttatag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (8)   
   KEGG PATHWAY (8)   
Genome (1)   
   KEGG GENOME (1)   
Gene (41)   
   KEGG ORTHOLOGY (1)   
   RefGene (37)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (6)   
   Pfam (6)   
All databases (62)   

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