KEGG   Lates calcarifer (barramundi perch): 108890553
Entry
108890553         CDS       T04895                                 
Symbol
hcfc1b
Name
(RefSeq) LOW QUALITY PROTEIN: host cell factor 1b
  KO
K14966  host cell factor 1
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf03083  Polycomb repressive complex
lcf04980  Cobalamin transport and metabolism
lcf05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    108890553 (hcfc1b)
 09150 Organismal Systems
  09154 Digestive system
   04980 Cobalamin transport and metabolism
    108890553 (hcfc1b)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    108890553 (hcfc1b)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:lcf01009]
    108890553 (hcfc1b)
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:lcf03036]
    108890553 (hcfc1b)
   03029 Mitochondrial biogenesis [BR:lcf03029]
    108890553 (hcfc1b)
Protein phosphatases and associated proteins [BR:lcf01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     108890553 (hcfc1b)
Chromosome and associated proteins [BR:lcf03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    NSL complex
     108890553 (hcfc1b)
   HMT complexes
    COMPASS/SET1 complex
     108890553 (hcfc1b)
    MLL-HCF complex
     108890553 (hcfc1b)
   Polycomb repressive complex (PRC) and associated proteins
    PR-DUB complex
     108890553 (hcfc1b)
Mitochondrial biogenesis [BR:lcf03029]
 Mitochondrial quality control factors
  Regulator of mitochondrial biogenesis
   Other regulator of mitochondrial biogenesis
    108890553 (hcfc1b)
SSDB
Motif
Pfam: Kelch_5 Kelch_3 Kelch_4 Kelch_1 Kelch_6 Kelch_2 fn3
Other DBs
NCBI-GeneID: 108890553
NCBI-ProteinID: XP_050927483
Position
LG6:27749831..27763600
AA seq 1599 aa
MASESATPAVLQPRWKRVVGWTGPVPRPRHGHRAVAIKELMVVFGGGNEGIVDELHVYNT
ATNQWFIPAVRGDVPPGCAAYGFVCDGTRLLVFGGMVEYGKYSNDLYELQASRWEWKRLK
AKAPKNGPPPCPRLGHSFSLIGSRCYLFGGLANDSEDPKNNIPRYLNDLYCLELRPGSSV
VGWEIPMTSGQPPPPRESHTAVVTSGHGASRLIIYGGMSGCRLGDLWVLDIDTLTWSKPA
LIGTAPLPRSLHSATTINNKMYVFGGWVPLVMDDVKVATHEKEWKCTNTLACLNLDSMCW
ETVLMDSLEENVPRARAGHCSVAINSRLYIWSGRDGYRKAWNNQVCCKDLWYLETERPCA
PSRVQLVRANTSSLEVSWGPSQTADMYLLQLQKYDIPATPAANSPASSPAPNPISMVTPG
ASSSKSPTPSAALPANQAVPLSGITLVPSPTASVPGSPLAAAAKAPAVLKVAAAPGAGGG
ASIVTVRQATPKPTVPVTTLPAGVRMVVPAQAGQATPIGSSPQMSGMAALAAAAAATQKI
PPSSAAVLNVPAGATIVKTVAVSPGSSSLPVKVAAPVTMVSNPATRMLKTAAAQVGGASV
VSNPGTPGRPIITVHKSGTVTVSPQAQVVTTVVGGVTKTITLINSPLSVGGGGALIGNLG
NLGKVVSVVQTKPVQSGAVTGQAGSSPVSQIIQTKAGLPAGTILKLVSSADGKQTTILST
AQAGSTPTKSTILGVAPTTSKPGTTIIKTIPVSALQGGAGGNSPITILTTKVMTPGTMGK
ILTTVPKISAGGQQGVTQVVLKGASGASGTILRTVPMGGVRLLSPGAVGSKPSVTTLVVK
ATTGVSSLGTVTGSVSTTVAGGVLTAASPSLPTPITTLATIASLASQVTTAAAAAAGPKQ
VTLITTPSGAEAQLLPQDLPVSIMASPTSEEPGSTTSTMTTTVGGEAGDTSAATVTLVCS
NPPCETHDTGTTNTATVASASMNRETQVSSNLSAVTCSNPPCETHETGTTNTATMAGAGG
LRQVCSNPPCETHETGTTNTTTTAGAGGLRQVCSNPPCETHETGTTNTATTATAQQGGDS
QQVDSTDPASSSDHASSTTANQNRAITTVTQATPTPGPSITEISSLVGEDRMESSEAVAM
VTAEEGEEPGLQVHVEGSEAAAQVTHTLRCTEXXPISSFFSNPSPSPQMETSDSGLPQEL
MSSEGDGGEVVSGTTTLMVTTGQTPDQLAVTMVTEDAAQQATIQAVLQAAGEGEGSEDQS
IPIVLTQQELAALVQQQQQLQDVQDQPEPEPQQSSVPTEGLAPADSLNDPAAESNGHELT
SSAVTSAVARLASTFSPAPPLTAGPAKIQAAAMVTMATNGVAATAGKQGIQVKSSVRDSR
WYDVGIVKVTNMVVSHFYVPYDDNMADDDSGVVPDYSQMRKVDLQPGTAYKFRVAGINIC
GRGAFSEVSAFKTCLPGFPGAPCAIKISKNLDGAQLTWEPPAVTSGKIVEYSVYLAIQSS
QASSGSGSSPAQLAFMRVYCGPNPSCLVQACSLSNAHIDYTTKPAIIFRIAARNQKGYGP
ATQVRWLQETSKDVKPAVKRPGSSPDHKPVGQKKFRTDQ
NT seq 4800 nt   +upstreamnt  +downstreamnt
atggcatccgaatccgccacccccgcggtgctgcagcctcgttggaagcgcgtcgtgggc
tggaccgggccggtaccgcggccccggcacggacaccgagccgtggccataaaggagctg
atggtggtgttcggcggagggaacgaggggatcgtggacgagctgcacgtctacaacaca
gccaccaaccagtggttcatcccggcggtgcgcggtgacgtcccccccggctgcgctgcc
tatggcttcgtgtgtgatgggacgaggttgctggtgtttggagggatggtggagtacggc
aaatacagcaacgacctgtacgagctgcaggcgagtcgttgggagtggaaacgtctgaag
gccaaagctccgaaaaacggcccgcccccctgcccccgcctcggacacagcttctctctg
attggcagccgctgctacttgtttggaggactggccaatgacagcgaggatcccaagaac
aacatccccaggtacctgaacgacctgtactgcctggagctgcgtccgggctctagcgtg
gtgggctgggagatcccgatgacgtcaggtcagccgcctccgcccagagagagtcacacg
gccgtggtgacgagcggccacggagccagcaggctgatcatctatggagggatgagtggc
tgcagactgggagatctgtgggtccttgacatagatactctgacctggagtaaacctgcc
ctcattggaaccgcccccctaccccgcagcctccactctgccaccactatcaacaacaag
atgtatgtgtttgggggttgggttcccctggtgatggatgatgttaaagtggcgactcat
gagaaggagtggaaatgcaccaacacgctggcctgcctcaacctggactccatgtgttgg
gagacggtcttgatggacagtctggaggagaacgtccccagagctcgagcaggtcactgc
agcgtggccatcaactccagactttacatctggagcggcagggatggatacaggaaggcc
tggaacaaccaggtgtgctgcaaggacctctggtacctggagacagagcgtccctgcgcc
ccctctcgggtgcagctggtccgagccaacacgtcgtctctggaggtgagctgggggccg
tcacagaccgccgacatgtacctgctgcagctgcagaagtacgacattcctgctacacct
gcagccaactcacctgcctccagccccgcccccaaccccatctccatggtcacacctgga
gccagctcctcaaagagccccacccccagcgctgcattaccggccaatcaggctgtccca
ctgtctggcatcacactcgtcccctcccccactgcctcagtacctggaagcccattggct
gcagctgctaaagcaccagcggtcctgaaggtggcagcagctccaggtgcagggggcgga
gcctccatcgtcacagtgagacaggccacgcccaaacccacagttcctgtgacaacactt
cctgcgggtgttcgtatggtcgtacctgcccaggccggacaggccacgccaatcggcagc
agtcctcagatgagcggcatggcggcattggcggcggcggccgcagcgactcagaagatc
cctccgtcctcagcagcggtgctgaacgtccccgcaggtgctacgatcgtaaagacggtg
gccgtcagcccggggtccagcagcctgccggtcaaagttgctgctcctgttaccatggtg
agtaacccagccactcggatgttaaagacagctgccgctcaagtgggcggagcctcggtg
gtgtccaatcctgggacgccgggccgaccaatcatcacggtccataagtcgggcacggtg
acggtgtcaccgcaggctcaggtggtcaccacagtggtgggcggagtcaccaagacaatc
accctcattaacagcccgctcagtgtgggaggaggcggggctctgattggtaacctcggt
aaccttggaaaggtggtgtcagtggtccagaccaaaccagttcagagtggagctgttact
ggtcaggccggcagcagcccggtctcccagatcatccagacgaaggccggcctcccagca
ggaaccatcctgaagctggtgtcatcagcagacgggaaacagacgaccatcctcagcaca
gctcaggctggatccacaccgaccaaatccaccatcctgggcgttgctccaacaacttcc
aaacctggaaccaccatcatcaagaccatcccggtgtctgcgctacaagggggggcaggt
ggaaacagtccaatcaccatcctgaccaccaaggtaatgacgccgggaaccatgggaaag
atcctcaccaccgtccccaagatctctgcagggggtcagcagggggtcacacaggtggtg
ctgaaaggagcttcaggtgcgtcaggtaccatcctcaggaccgtcccaatgggcggagtc
agactgctgtcaccaggagctgtcggctccaaaccctcagtcactacactggtcgtcaag
gcaaccacaggtgtgtccagtctggggacagtaacaggaagtgtctccaccacagtggca
ggtggagtcctcactgccgccagcccctccctaccgacgcccatcaccaccctggcaacc
atcgcttcactggccagccaggttaccacagcagctgctgctgcagccggacccaaacag
gtgaccctgatcacgactccaagcggagctgaggctcagctgctgcctcaggatcttccc
gtttccatcatggcctctcctacctcagaggaacctggaagtactacaagtactatgact
actacagtaggaggagaggctggagatacttcagctgctacagtgacactggtctgctcc
aacccgccctgcgagacacacgacaccggcaccaccaacactgccaccgttgcctccgcc
agcatgaaccgagagacacaggtgagctccaacctgtccgctgttacctgctctaatccg
ccgtgtgagacgcacgagactggaaccaccaacaccgccaccatggctggagctggaggt
ctccgacaggtgtgttcaaatcctccgtgtgagacacatgagaccggaaccaccaacacc
acgaccacagccggagctggaggactgcgacaggtgtgttcaaatccgccgtgtgagacg
catgagaccggaaccaccaacactgcaaccacagctacagctcagcagggtggagacagt
cagcaggtcgactccacagaccccgcctcctcctctgaccacgcctcgtccaccacggcc
aatcagaacagagctattaccacggttacacaggcgacgcccacacctggaccatccata
actgagatctcgtcattggttggggaggacaggatggagtcctcagaggcagtcgccatg
gtgaccgcagaggagggggaggagcctgggctgcaggttcatgtggagggcagtgaggca
gcagcacaggtaacacacacactcaggtgcacggagtaataaccaatcagctcgttcttc
tctaacccctccccctccccccagatggagacctcagacagtggtcttcctcaggagctg
atgtcatcagaaggggacggaggtgaggtggtttctgggacaacgaccctgatggtgaca
acagggcagaccccagatcagctggctgttaccatggtaacagaggacgcagctcagcag
gcgacgatacaggcggtgctgcaggcggccggtgaaggtgagggctcagaggatcagtcc
attcccatcgttctgacccagcaggaacttgcagctctggtccaacagcagcagcagctg
caggatgtccaggaccaaccagaaccagaaccacagcaaagcagcgtccccacagagggc
cttgctccggccgacagcctcaatgacccagcagcagagagcaacgggcacgagctgaca
tcatcagcagtgacgagcgccgtcgcccgattggccagcacgttcagccccgcccctcct
ctgacagcaggtccggctaagattcaagctgctgccatggtgaccatggcaaccaatggc
gtcgcagcaaccgcagggaaacagggcatccaggtgaagtcttcggttcgggacagtcgg
tggtacgacgtcggcatcgtcaaggttacaaacatggtggtctctcacttctacgtccca
tacgatgacaacatggccgacgatgactcaggtgtggtacctgactacagtcagatgagg
aaggtggacctgcagccgggaacagcctataaattccgtgttgctgggatcaatatctgc
ggccgcggagcgttctccgaggtgtcggcatttaaaacgtgtctgcctggtttccctgga
gcgccctgcgccatcaagatcagcaagaacctggacggagcccagctgacctgggagcct
cctgctgtcacctcagggaagattgtggagtactctgtgtacctggccatccagtccagc
caggcctcctccggttcaggttccagtcccgcccagctggccttcatgagggtctactgt
ggtcccaacccgtcctgcctggtccaggcctgcagcctctccaacgcccatatcgactac
accaccaaacccgccatcatcttccgcatcgctgcccggaaccagaagggctacggtcca
gccacgcaggtccggtggttacaagaaaccagtaaagacgtcaaaccagcagtgaagaga
ccaggatcttctccagaccataaacctgtcggacagaagaagttcagaactgaccaatag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (38)   
   KEGG ORTHOLOGY (1)   
   RefGene (34)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (7)   
   Pfam (7)   
All databases (57)   

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