KEGG   Latimeria chalumnae (coelacanth): 102346381
Entry
102346381         CDS       T02913                                 
Symbol
COL4A6
Name
(RefSeq) collagen type IV alpha 6 chain
  KO
K06237  collagen type IV alpha
Organism
lcm  Latimeria chalumnae (coelacanth)
Pathway
lcm04510  Focal adhesion
lcm04512  ECM-receptor interaction
lcm04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:lcm00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    102346381 (COL4A6)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    102346381 (COL4A6)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    102346381 (COL4A6)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:lcm04147]
    102346381 (COL4A6)
   00536 Glycosaminoglycan binding proteins [BR:lcm00536]
    102346381 (COL4A6)
Exosome [BR:lcm04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   102346381 (COL4A6)
Glycosaminoglycan binding proteins [BR:lcm00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   102346381 (COL4A6)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 102346381
NCBI-ProteinID: XP_014345254
Position
Un
AA seq 1498 aa
MKIGIVVLIAVSWAAELVQAGLKNAYEGPCEGRDCSANCRCFPEKGARGRPGPLGPQGPM
GPLGFPGPEGSLGSKGDRGNNGPPGPAGLKGEKGPMGVPGFQGLNGIPGHPGQPGNRGLP
GLDGCNGTIGEKGIPGQTGIYGPPGTSGRPGLKGQKGEPSFFGIGGGVKGARVRLFKSCW
RGERKKKRFFGFKGYPGQSGPMGPIGFTGEPGLPGPPGYPGPKGNMGLGFQGEKGEKGDF
GPPGPPGPPPASGTLEFVGFPKGVKGEQGEPGFPGFPGEIGLPGPPGFYNFQAEKGEKGI
PGLPGPRGSSGFDGPPGFNGRKGDAGFPGSLGSRGLGGRKQLFSLSSGPPGDPGPRGIPG
PRGEEGLMGPPGSPGLPGPPAPLLGGRGNPGFQGIPGPKGERGNLGPPGVGLRGPPGLGG
PGGRQGPPGPPGISGLPLNVIPFGERGEPGRPGTRGEPGTTGPVGFKGEPGDCACLSDGT
RTAPPGRPGLPGLPGDFGLPGENGLDGANGFPGPEGPRGPPGFPGVPGGPGPKGIKGDSF
FATTKGEPGNLGERGVMGPAGIPGKPGREGSPGTPGRPGPPGDAAPGLVGDKGFPGASGF
PGRPGNIGPPGISFPGSVGLRGPPGDPGLEGLPGQPGLPGPRGDTLPCVIPGSAGVPGFP
GFPGSPGFKGSKGLPGIPGRPGFDGQKGEPGTPGIVIQAGLPGFTGPRGDAGQPGLPGLD
GTEGFPGKKGAPGRLGPKGAPGEVFGAERGAPGIPGRLGLMGDKGSPGDSGFPGRKGTDG
RFGIPGAKGERGNPGFPGVPGFPGRPGPGGPFGIPGRPGQSGGLGIPGSPGCQGFPGPKG
LKGDAGPPGPAGMKGQKGLTGPQGFPGNKGLPGPPGFSNRDGLPGFPGVKGWWKFSEHCA
EWNIWQSGHNLQPSDSEARVLPTEPPTPLFTDWRFFLTGNRGDPGPPGLDIVVSSAMLSK
GDNGDPGFSGNRGFPGPRGDRGFPGRPGTPGLPGLTGLPGLDKGLPGNPGFPGRSGPPGL
PGEKGSPGILGFPGMFGERGDDGSPGGPGFPGVSGIPGAKGVSGSPGLDGLNGLPGPKGS
RGTPGLSDPGSIGSPGVPGLKGEPGSPGIRTGGPGHPGEKGFRGNPGVPGIAGRPGLPGP
PGISIPSNIPGKPGDPGFPGLSGEIGLPGPPGLPGPPGPGSTQGDTGTPGFPGIPGVPGV
KGISGFPGSPGLPGAVGLKGERGDPGNMGFPGTDGPSGNPGFSGSKGWSGAQGSPGRPGP
AGLPGMPGRSASVGYTLVKHSQSSQVPPCPLGMNQMWEGYSLLYVEGQEKAHNQDLGLAG
SCLPRFTTMPFIYCNVDEVCYYASRNDKSYWLSTTAPIPMMPVGSLQIQQYISRCSVCEA
PSQAVAVHSQDITIPQCPEGWRSLWIGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPF
IECNGARGTCHYYSNKYSFWLTTVEQNQQFLFAPPSETLKAGQLLTRVSRCQVCMKNL
NT seq 4497 nt   +upstreamnt  +downstreamnt
atgaaaattgggattgtggttctgattgcagtttcttgggctgcagaattggtacaagcg
ggattaaagaacgcctatgaggggccgtgtgagggtcgagactgcagtgccaactgtaga
tgtttcccagagaaaggagctcggggtcgtccagggccactcgggccacagggccccatg
ggacctctagggtttccaggaccagagggttctctggggtcgaagggcgataggggaaac
aacggacctcccggaccagctggattaaaaggagaaaagggtccaatgggagttccaggt
tttcagggccttaacggaataccaggtcatcccgggcaaccgggtaacagggggctccct
ggtctcgatggctgcaatggtacgatcggagagaaggggataccaggccagacaggaatc
tatgggcctccaggaacatcaggtcgaccaggactgaagggtcagaaaggagaaccttca
ttcttcggaataggcggcggtgtgaagggagcgagggtaaggctcttcaaaagttgttgg
aggggggaaaggaaaaaaaaaagattttttggtttcaaaggatacccgggtcagtcaggc
ccgatgggtccaattggattcacaggagaaccgggtctacccggtccccccggttacccg
gggccaaaagggaacatgggattaggctttcaaggagagaaaggcgaaaagggagatttt
ggcccgccgggtcctccaggccctccaccagcctctgggacattggagtttgtgggattt
ccaaaaggcgtcaaaggagaacagggggagccaggatttccaggatttccaggagaaatt
ggacttccgggacctccgggtttttataactttcaagcggagaaaggtgaaaaaggcatc
cccggactgccgggtccaaggggctcttctggatttgatgggcctccaggatttaatggg
cgtaagggagacgctggctttcctggctccctgggatcgagaggacttggtggaagaaag
caactgttctctctttcttcaggtcctcccggagacccaggtccacggggaatccctggc
ccaagaggtgaggaaggactgatgggaccacctggctctcccggcctgcctgggcctccg
gctcctctgttaggtggaaggggcaatccaggtttccaaggtatcccagggcctaaaggt
gaaaggggaaatcttggaccaccaggtgttggactgcgtggcccccctggtttaggtggt
ccaggaggtcgccaagggcctcccgggcctcccggtatctcaggtctccctctcaatgta
attccatttggagaacgtggtgaaccagggcgtccaggaacccgtggggaaccagggacc
acaggaccagtaggattcaaaggtgagccgggtgattgtgcctgccttagtgatgggact
agaactgcacctccagggagacccggcctccctggtcttcctggtgatttcggcctacca
ggagagaatggattggatggagcaaatggctttccaggcccggaaggcccacgaggccca
cccggttttccaggtgtaccaggcggtccaggcccgaaaggaatcaaaggggattcattc
tttgccaccacaaaaggggaaccaggcaatctaggtgaaagaggagtcatgggccctgct
ggcattcctgggaagcccggcagggagggaagcccgggcacgccaggccgcccaggcccg
cctggtgatgctgcccccggcctagttggtgataaaggcttccctggtgcttctgggttc
ccaggtcgtccaggtaacatcggcccaccaggcatcagctttccaggctcagttggactt
cgtggacctccaggcgaccctggattggaagggttaccaggacagccaggtcttccagga
ccaagaggtgacaccttgccttgtgtaattcctggttctgctggtgtaccaggctttccg
ggtttcccaggatcaccaggctttaaaggttccaaaggccttcccggtatcccaggtcga
ccagggtttgacggacagaagggagaaccaggcactccagggatagtgattcaagcaggc
ctaccaggatttactgggcctcgcggtgatgccggccagccaggtcttccaggattagat
ggaactgaaggtttcccaggaaagaaaggagctcccgggcgtctgggccccaaaggagct
ccaggtgaagtgttcggagctgaaaggggagctccaggtataccaggccgtcttggattg
atgggagacaaaggaagtcctggagactctggctttccaggacgaaaaggcactgatgga
agatttggcataccaggcgccaaaggggagcggggaaatccgggctttcctggcgtccca
ggatttccaggacgtccggggcctggagggcccttcggaattccaggcagaccaggtcaa
agtggaggactgggcattccaggttcaccaggctgtcaaggatttcctggaccgaaaggc
ttgaaaggcgatgcggggcccccaggacctgctggtatgaaaggtcagaaagggttaaca
ggtcctcaaggcttcccaggaaacaaaggattaccaggcccgcctgggtttagtaacaga
gatggacttcctggcttccctggagtgaaaggttggtggaaatttagtgagcactgtgca
gaatggaatatttggcaaagcggccataacctgcaaccttctgactcagaggcaagagtg
ctacccactgagccaccaacacccctctttactgactggaggttttttcttacaggcaac
cgaggagatcctggcccccctggccttgatatagtggtttcttcagccatgctgtcaaaa
ggagacaacggtgatcctggcttctctggaaatcgtggttttccgggtcctagaggtgac
cgaggcttcccaggacggcctgggacccctgggctaccaggtctgaccggcctgcccgga
ttggataaaggactgccgggtaatcctggctttcccggaagaagtggaccgcctggcctc
ccaggtgaaaagggatctcctggaattctcggattcccaggaatgtttggagaaaggggt
gatgatggttctcctggtggtccaggatttccaggtgtatctggcattcctggtgcaaaa
ggagtctccgggtctccaggtctggatggtttgaacggcttgccggggcctaaaggatca
cgaggaacgccaggattgagcgatccaggttctataggttcccctggtgtcccaggcctt
aagggtgaacccggaagtccgggtattcgaacaggtggtccggggcaccctggagaaaaa
ggctttagaggcaacccaggtgttcctggtatagctggtcgccctggcctgccaggacct
cctggaatctccatcccgtcgaacatacctggaaaacctggtgatcctggtttccctgga
ctgagcggtgaaataggtctcccaggcccacctggtttacctggtcctccgggtccaggg
tcaactcagggtgataccggaacccctggatttcctggcattcctggtgttcctggcgta
aaaggtatcagtggattccctggttctcctggacttcctggtgctgtaggacttaaaggt
gaacgaggtgatccaggcaatatgggcttcccaggtacagacggcccttcaggcaaccct
ggtttttctggatcaaaaggttggagtggggcccaaggttccccagggcggccaggtccg
gctggtctgcccgggatgcccggtcgcagtgccagtgtgggctacaccttggtaaagcac
agccagtcctcccaagtgccaccctgcccgctcggaatgaaccaaatgtgggaagggtac
agcctgctgtatgtggaaggacaggagaaggcacacaaccaggacctgggtctggcgggc
tcgtgcttgccacgcttcaccaccatgccgtttatctactgcaacgtcgatgaggtttgc
tactacgccagcaggaatgacaagtcctattggctgtccaccacggcccccatccccatg
atgccggtgggcagtctccagatccagcagtacatcagccgctgctccgtctgcgaagcc
ccctcgcaggccgtcgccgtgcacagccaggacatcacgatcccacagtgccccgagggc
tggcggagtctctggattggctactccttcctgatgcacacagctgctggcgctgaaggt
gggggccaatccctcgtgtcgcccggatcctgcctggaagatttccgcgccacccctttc
atcgagtgcaatggcgcccgcgggacctgccactactacagcaacaagtacagcttctgg
ctgacgacggtcgagcagaaccagcagttcctcttcgcccctccctcggaaaccctgaaa
gcgggacagctcctgacccgggtcagtcggtgccaagtgtgcatgaagaacttgtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (62)   
   KEGG ORTHOLOGY (1)   
   RefGene (58)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (75)   

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