KEGG   Larimichthys crocea (large yellow croaker): 104920416
Entry
104920416         CDS       T04659                                 
Symbol
col9a2
Name
(RefSeq) collagen alpha-2(IX) chain
  KO
K08131  collagen type IX alpha
Organism
lco  Larimichthys crocea (large yellow croaker)
Pathway
lco04510  Focal adhesion
lco04512  ECM-receptor interaction
lco04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:lco00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    104920416 (col9a2)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    104920416 (col9a2)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    104920416 (col9a2)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:lco00535]
    104920416 (col9a2)
Proteoglycans [BR:lco00535]
 Extracellular matrix (ECM) proteoglycans
  Others
   104920416 (col9a2)
SSDB
Motif
Pfam: Collagen
Other DBs
NCBI-GeneID: 104920416
NCBI-ProteinID: XP_010730980
Position
XIII:45959417..45978662
AA seq 691 aa
MAALSALLKTWVILQTLCLALAQVRGPPGPQGQPGPPGPSGTPGSDGIDGDKGPPGPPGP
PGQKGEPGEPGPDGVPGENGIDGLIGAKGDRGPVGSPGPKGQPGPTGEPGAPGPGLPGLS
GIPGPIGLPGEIGETGPKGVMGSPGPPGLPGPPGKPGPPGKFIGGEEGSADFQCPLNCPA
GPKGPQGLQGVKGHKGRAGILGDPGSIGKTGTKGEVGISGEQGIPGPSGPMGLRGYPGMM
GPKGEAGPRGYKGINGPVGLPGPPGEEGPQGPPGEAGDKGDKGSRGIPGPQGAVGKKGEN
GLPGIDGKDGTPGIPGIKGGPGQAGMPGPPGPQGAAGLPGSPGAKGGPGVKGEPGPRGHV
GMQGASGPLGEPGLPGEAGMEGVPGPKGDRGQRGEAGPQGIVGKPGNKGVRGPIGVPGAQ
GLSGTKGDKGFQGKVGSKGDVGDPGVEGLAGEKGEKGLSGEPGPKGQQGIRGDQGYNGPT
GDPGKPGDQGPPGLPGPRGLNGERGVPGMPGIQGSSGRDASDQHIIEVVLKMLQERLAAV
AVSAKRAVLGGAGVMGPPGPPGPPGSPGPQGPHGLPGARGIPGIIGGPGQIGNTGLKGKR
GPKGERGDPGKPHPGQPGPPGIPGPPGIDGVARDGRPGERGPQGSAGEAGYPGKAGPAGL
PGFCETAMCLAASAYTSPRLQEAGRIKGPNV
NT seq 2076 nt   +upstreamnt  +downstreamnt
atggctgctctctctgccttgctgaagacctgggtaatactgcagaccttgtgcctggct
ctggcccaagtgaggggtccacctggacctcagggacagcccggcccaccaggcccctct
ggcacccctggatcagacggcattgatggagataaaggacctcctgggccccctggtcca
ccaggacaaaagggagagccgggagagccaggtcctgatggagtgccaggagagaatggg
attgatggtttgattggagcaaagggtgatcgaggtcctgttgggagccctggccctaag
ggtcaacctggaccaactggtgaacctggagcgcctggacccggccttccaggactgtct
ggaattccagggccgattgggcttccaggtgaaattggagaaactggaccaaagggtgtc
atgggatcacctggacctccaggacttcctggacctcctggcaagccaggtcctccaggg
aagtttattggcggagaggaaggcagtgcagacttccagtgtcctcttaactgtccagca
ggacctaaaggcccacagggactgcaaggagtcaagggacacaaaggacgtgctggtatt
ctcggtgaccccggcagcattggaaagacgggtaccaagggagaagtgggcatctctggg
gaacagggtatcccaggaccttcgggtccaatgggtctgaggggttacccaggaatgatg
ggtcctaaaggggaagcagggcctcgtggttacaagggcatcaacggacctgtaggactt
cctgggccccctggtgaggaaggacctcagggaccacctggagaggcaggagacaaggga
gacaaaggcagccgaggtatccctggcccacagggtgcggttggcaaaaagggagagaat
ggtctgccgggtattgatggaaaagatggcacacctggtattcctggaatcaagggcggc
cctggccaggctgggatgcctggtcctcctggtcctcagggagcagcgggattgcctgga
agtcctggggcaaagggaggacctggagttaagggcgagcctggacctaggggccatgtt
ggtatgcaaggtgcctccggaccactgggtgagcctggtcttcctggcgaggctggtatg
gaaggtgttcctggacccaagggtgacagaggccagcgtggagaagctgggccacaggga
atagtcggcaagcctggaaacaaaggagtgagaggaccaataggtgttccaggtgcacag
ggtcttagtggaaccaagggagacaagggcttccaaggaaaagttgggtcaaagggagac
gttggtgaccccggtgttgaaggattggctggggagaaaggtgaaaagggtttgtctggt
gaacccgggcccaaaggacagcaaggaatcaggggtgaccaaggatacaatggacccaca
ggagaccctggtaaacccggagaccagggaccaccaggattgcccggtcctaggggactc
aatggagagcgaggagttcctggcatgccaggcattcagggatcatcaggacgtgatgca
tccgaccagcatattattgaagtggttttgaagatgttgcaggagaggcttgcagcagta
gcggtgagcgccaagagggctgtgcttggtggagcaggtgtaatgggtcctcctgggcct
cctggacctccgggttctcctggtcctcaagggccacatggcttacctggtgcccgtggc
attcctggcataattggaggacctggacagattggaaacacaggacttaaaggaaagaga
gggccaaagggagaaagaggagatcccggtaaaccccatccaggacaaccaggaccccca
ggaataccaggtcctcctggtattgatggcgtggctcgggacggtaggcctggcgagaga
ggacctcagggatcagccggagaggccggttaccccggtaaggcaggtccggcaggtctc
ccaggcttctgcgagacggcaatgtgtctggctgcatcagcgtacacctccccgagacta
caggaggcgggaagaatcaaaggaccaaatgtttag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (35)   
   KEGG ORTHOLOGY (1)   
   RefGene (31)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (44)   

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