KEGG   Larimichthys crocea (large yellow croaker): 104935046
Entry
104935046         CDS       T04659                                 
Name
(RefSeq) ATP-dependent RNA helicase DDX3X isoform X8
  KO
K11594  ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
Organism
lco  Larimichthys crocea (large yellow croaker)
Pathway
lco04622  RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:lco00001]
 09150 Organismal Systems
  09151 Immune system
   04622 RIG-I-like receptor signaling pathway
    104935046
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lco03019]
    104935046
   03041 Spliceosome [BR:lco03041]
    104935046
   03036 Chromosome and associated proteins [BR:lco03036]
    104935046
Enzymes [BR:lco01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     104935046
Messenger RNA biogenesis [BR:lco03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     104935046
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     104935046
Spliceosome [BR:lco03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA helicase-like proteins
    104935046
Chromosome and associated proteins [BR:lco03036]
 Eukaryotic type
  Gene silencing
   RISC (RNA-induced silencing complex)
    104935046
SSDB
Motif
Pfam: DEAD Helicase_C ResIII UTP25
Other DBs
NCBI-GeneID: 104935046
NCBI-ProteinID: XP_010749134
Position
Unknown
AA seq 723 aa
MSHVAVENVHGLEQQLAVLDLSAADGQGGGTNRRYIPPHLRNKDASKNAGNAFAAGRQGG
YTIAPAANYGWDGGRNNFVNGYHDNRMTAGNSFNRGPPRMERGRGGVGGGYRGNRAGAFN
PINPAQPMGFASYENKDAGGWNTAKDAYSSFGNNRGKSAFFNDRGNANRGRFEHGGFGGG
GGGGNSRWVEESRDDGDWSKPTPRNERLEHELFSGSNTGINFEKYDDIPVEATGQNCPHH
IESFQDVDMGEIVMGNIALSRYTRPTPVQKYAIPIVKSKRDLMACAQTGSGKTAAFLLPI
LSQIYTEGPGEALSAAKASGQENGKFGRRKQYPISLVLAPTRELALQIYDEARKFSYRSR
VRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCNYLVLDEADRMLD
MGFEPQIRRIVEQDTMPHKGMRQTMMFSATFPKEIQILARDFLEEYIFLAVGRVGSTSEN
ITQKVVWVEESDKRSFLLDLLSATGKDSLTLVFVETKKGADALEDFLYREGYACTSIHGD
RSQRDREEALNQFRSGKCPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR
VGNLGLATSFFNDKNGNITKDLLDILVEAKQEVPSWLESLAYEHQHKSSNRGRSKRFSGG
FGARDYRQTAAGGNAGGFGGRGGRNQAGHGGTRGFGGGGFGNFYTSDGYGGNYSHSQVDW
WGN
NT seq 2172 nt   +upstreamnt  +downstreamnt
atgagtcatgtggccgtcgagaatgtccacggtctagagcagcagctcgctgtcctagac
ttgagtgcagcagacggacaaggtggaggcactaacaggcgatacattcctccacattta
cggaacaaagacgcttccaaaaatgcaggaaacgccttcgctgccggtcgacagggtggc
tacaccatcgcgcccgcagccaactatggttgggacggggggcgcaacaacttcgtcaac
ggctaccatgacaaccgcatgaccgccggcaactcgttcaaccgcggcccgcctcgcatg
gagcggggccgaggcggtgtaggaggaggttaccgcggcaacagggccggagccttcaac
cccatcaacccggcgcagccgatgggcttcgccagctacgaaaacaaagacgccggcggc
tggaacactgccaaggacgcctatagcagttttggtaacaaccgagggaagtctgcgttc
ttcaatgaccgaggcaacgcgaacagagggaggtttgaacatggtggatttggcggcggt
ggaggaggaggaaacagccgctgggtggaggagtccagagacgacggagactggtcgaaa
ccgacgccacggaacgaacgccttgaacacgagctgttctccggcagcaacaccggcatc
aactttgagaagtacgacgacattcctgttgaggccacgggacagaactgccctcaccac
atcgagagttttcaagatgtggacatgggcgagatcgtcatgggcaacattgctctgagc
cgttacaccaggccgaccccggtccagaaatacgccatccctatcgtcaagtcgaagcga
gacctcatggcctgcgcacagacgggttctgggaagactgctgcattcctgctgccgatt
ctgagccagatctacaccgagggaccaggagaagctctcagcgcggctaaagcgtctgga
caggaaaatggaaagtttggccgccgtaagcagtaccccatctcactggtactggctcca
accagagaactggctctgcagatttatgatgaagccaggaagttctcctaccgctcccga
gtgcgtccctgtgtcgtgtacggaggagcagacatcggtcagcagatcagagacctggag
agaggctgtcacctgctggtggccacgccgggaagactggtggacatgatggagaggggc
aagatcggactggactactgcaactacctggtcctggacgaagcagatcgcatgttggac
atgggattcgaaccgcagataagacgcatcgttgaacaggacaccatgccgcacaaaggc
atgcgacaaaccatgatgttcagcgcgacctttcctaaagagatccagatcctggccagg
gatttcctggaggagtacatcttcctggcggtgggcagagttggttccacttcagagaac
atcactcagaaagtggtgtgggtggaagaaagcgataagaggtctttcctcctggacctc
cttagcgctacagggaaggactcgctcactctcgtttttgtggagaccaagaaaggcgcc
gacgccttggaggacttcctgtaccgggagggctacgcctgcaccagtatccacggcgac
cgctcccagagagaccgcgaggaggcgctgaaccagttcagatcaggaaaatgccccatc
ctggtggccacagcggtagcagctcgaggtctggacatctccaacgtgaagcacgttatc
aactttgacctgcccagcgacatcgaggagtacgtccaccgtatcggacgtacaggtcga
gtcggaaacttgggactggccacgtcgttcttcaatgataaaaacggaaacatcacgaag
gacctgctggacatcctggtcgaggccaaacaagaagttccctcgtggctcgagagcctg
gcttacgaacaccagcacaaaagcagcaaccgaggacgctctaagaggttctctggcggt
ttcggagcacgtgattatcgccaaacagccgcaggaggaaacgccggagggttcggagga
cgtggaggtcgcaatcaggcgggacacggaggaacgcgcggctttggaggaggtggtttc
ggcaacttctacaccagcgacggctacggcggcaactactcgcactctcaagttgactgg
tggggcaactag

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Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (8)   
   RefSeq(pep) (8)   
DNA sequence (8)   
   RefSeq(nuc) (8)   
Protein domain (4)   
   Pfam (4)   
All databases (43)   

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