KEGG   Leclercia sp. W17: DVA44_06480
Entry
DVA44_06480       CDS       T05987                                 
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
lee  Leclercia sp. W17
Pathway
lee03030  DNA replication
lee03410  Base excision repair
lee03420  Nucleotide excision repair
lee03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:lee00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    DVA44_06480
   03410 Base excision repair
    DVA44_06480
   03420 Nucleotide excision repair
    DVA44_06480
   03430 Mismatch repair
    DVA44_06480
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lee03032]
    DVA44_06480
   03400 DNA repair and recombination proteins [BR:lee03400]
    DVA44_06480
Enzymes [BR:lee01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     DVA44_06480
DNA replication proteins [BR:lee03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     DVA44_06480
DNA repair and recombination proteins [BR:lee03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     DVA44_06480
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     DVA44_06480
   MMR (mismatch excision repair)
    DNA ligase
     DVA44_06480
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      DVA44_06480
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT HHH RNA_ligase DUF2229
Other DBs
NCBI-ProteinID: AXF63806
UniProt: A0A345C7Q1
Position
1316352..1318367
AA seq 671 aa
MDSIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPELITPDSPTQ
RVGAAPLAFFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKHTDALSWCCELKLDGLA
VSILYENGVMIRAATRGDGTTGEDITANVRTIRAIPLKLHGENIPARLEVRGEVFLPQAG
FEKINEEARRTGGKIFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHL
GRLLQFKAWGLPVSNRVQLCDSPEAVLAFYRQVEADRPTLGFDIDGVVIKVNSLALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLKPVQVAGVLVSNATLHN
ADEIDRLGLRIGDKVVIRRAGDVIPQVVNVVESERPDDTRPVEFPTHCPVCGSDVERVEG
EAVARCTGGLVCGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFRLTPG
KLTGLDRMGPKSAQNVADALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEK
ATIDELQKVPDVGIVVATHVFNFFSEESNRDVIGQLLNEGIRWSAPVAINADEIDSPFAG
KTVVLTGSLSQLSRDDAKARLTALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVI
DEDEMLRLLGE
NT seq 2016 nt   +upstreamnt  +downstreamnt
atggactcaatcgaacaacaactcaccgaactgcgaaccacgcttcgccaccatgaatat
ctctatcatgtgatggatgcgccggaagtgccggacgcggagtatgaccgtctgatgcgt
gagctgcgcgagcttgaagcgcagcaccccgaattaatcacgccggactcgccaacccag
cgcgtcggggcggcaccgctggcctttttcagccaggtccgtcatgaagtgccgatgctg
tcgctggataacgtctttgatgaagagagcttcctcgccttcaacaaacgcgtccaggat
cgcctgaagcataccgatgccctgagctggtgctgcgagctgaagctggatgggctggcc
gtcagcattctgtacgaaaatggcgtgatgatccgcgcggccacccgcggcgatggcacc
actggcgaggacattaccgccaatgtgcgtaccatccgcgccattccgctcaaattacat
ggcgagaacattccggcacgtctcgaagtgcgcggcgaagttttcctgccccaggcggga
tttgaaaaaattaacgaagaggcgcgtcgtaccggcggcaaaatcttcgctaacccccgc
aatgccgccgccggatcgctgcgccagcttgacccgcgtattaccgcgaagcgcccgcta
acgttcttctgctatggcgtcggcatcctggaagggggcgagctgcctgatacccatctg
ggccgtttgctgcagtttaaagcctgggggctgccggtcagtaaccgggtgcagctgtgc
gactcgccggaggccgtgctggcgttttatcgtcaggttgaagccgatcgtccgacgctg
ggcttcgatatcgacggggtggtgatcaaagtcaactccctcgcactgcaggagcagctt
ggctttgtcgcccgtgcgccgcgctgggcggtagcctttaagttcccggcgcaggaacag
atgacctttgtgcgtgacgtagagttccaggtggggcgaaccggggcgataacgcctgtc
gcgcgtctgaagccggttcaggtggccggggtactggtcagcaatgcaaccctgcacaac
gccgatgagatcgatcggcttgggctgcgtattggcgataaggtggtgatccgccgtgcc
ggggacgtgatcccgcaggtggtgaacgtggtggaatcagagcgtcctgacgatacgcgc
cccgttgagttcccgacccactgtccggtgtgcggctcagatgttgagcgcgtcgaaggg
gaggccgtagcccgctgtaccggcggtttggtctgcggcgcccagcgcaaagagtccctg
aaacatttcgtctcccgccgggcaatggatgtagacggtatgggcgataagatcatcgac
cagctggtggaaaaagagtatgtccatacgccagccgatctgttccgcctgacgcccggt
aagctgaccgggctggatcgcatggggcctaaatctgcccagaacgtggccgatgcgctg
gaaaaggccaaagagaccacctttgcccgtttcctctacgcactgggtatccgcgaagta
ggtgaagcgacggcggcagggctggcggcatatttcggtacgctggaggcgctcgaaaag
gcgacgatcgacgaactgcaaaaggtgccggacgttggcatcgtggttgctacccacgtc
tttaacttcttctcggaagagagcaaccgcgacgttatcggtcagttgcttaatgaaggg
atccgctggtctgcgccggtggcgatcaacgccgacgagattgatagcccctttgccggc
aaaaccgtggtgctgaccggtagcctgagccagctttcacgcgatgatgctaaagcgcgt
ctgacggcgctgggggcgaaagtggctggcagcgtgtcgaagaaaaccgacctggtgatt
gccggtgaagcggcgggctctaaacttgccaaagcgcaggagctgggcattacggtcatc
gacgaagacgaaatgctgcgtctgttgggagagtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (29)   

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