KEGG   Laribacter hongkongensis: LHK_00065
Entry
LHK_00065         CDS       T00884                                 
Symbol
uvrD
Name
(GenBank) UvrD
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
lhk  Laribacter hongkongensis
Pathway
lhk03420  Nucleotide excision repair
lhk03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:lhk00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    LHK_00065 (uvrD)
   03430 Mismatch repair
    LHK_00065 (uvrD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lhk03400]
    LHK_00065 (uvrD)
Enzymes [BR:lhk01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     LHK_00065 (uvrD)
DNA repair and recombination proteins [BR:lhk03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     LHK_00065 (uvrD)
   MMR (mismatch excision repair)
    Other MMR factors
     LHK_00065 (uvrD)
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 AAA_30 PcrA_UvrD_tudor Viral_helicase1 AAA_12 Amidohydro_2 AAA_22 DUF3553 CarD_TRCF_RID
Other DBs
NCBI-ProteinID: ACO73061
UniProt: C1D9U8
Position
complement(60528..62660)
AA seq 710 aa
MNSDFLAGLNPAQLAAVTTRSHALVLAGAGSGKTRVLTSRIAWLLREGLASPASVLAVTF
TNKAAREMQTRVGAMLPVNPRMMWIGTFHGLAHRLLRLHHRDAGLPATFTILDSQDQLAA
IKRLLKALNLSDDTYPPRQLMQFINRHKEQGLRPDRVQAASAFDGRLIDIWREYERQCRR
EGVVDFAELLLASFELLTGNEALRAHYQSRFNQILVDEFQDTNRLQYQWLRCLAGPAATL
FAVGDDDQSIYAFRGAEIGNMHDFLRDYHITEPVRLEQNYRSTGTILDAANAVIAHNHGR
LGKSLWTDDAAGEAIRVYRGWNDADEAEFVAEEVRLRRREGVELSDMAVLYRSNAQSRAL
EHALFQAGIAYRVVGGLRFFERQEIKHALAYLRLVASPDDDNALLRVINVPARGIGARTV
ESIQAHAREAGTSLWQAACRTGGRAAASVGRFVQLIESLQGDAARLDFAGLVSHIIDASG
LRALYQADKDGADRLENLDELVNAAVGFQPDDPAQTVTEFLTHAALEAGDHEATPGETAL
TLMTVHAAKGLEFDSVFVTGLEEGLFPHEQSFSDPDGLEEERRLMYVAITRARRRLTLSC
AQSRMLHGQSRYPLPSRFLDEIPLPLLAPVNGSPAAPRTAAPVPAAPRPVKTNVILAGGL
RIGQTVAHPKFGIGVIVRAEGQPDEARVEVNFTDHGSKWLDLRYARLTPL
NT seq 2133 nt   +upstreamnt  +downstreamnt
atgaattccgatttcctcgccggcctcaatccggcgcagctcgccgccgttacgacccgc
agccacgcgctggtgctcgccggagccggcagcggcaagacccgggtgctgaccagccgc
atcgcctggctgctgcgcgaaggtctggcctcgccggccagcgtgctggccgtcaccttc
accaacaaggccgcccgcgagatgcagacccgcgtcggtgccatgctgccggtcaatccg
cgcatgatgtggatcggcaccttccacgggctggcgcaccgccttctgcgcctgcaccac
cgcgacgccggcctgccggccaccttcaccatcctcgacagccaggaccagctggccgcc
atcaagcggctcctgaaggcgctcaacctgtccgacgacacctatccaccgcgccagctg
atgcagttcatcaaccgccacaaggaacagggactgcgcccggaccgcgtgcaggccgcc
agcgccttcgacggccggctgatcgacatctggcgcgaatacgagcgccagtgccgccgc
gaaggcgtggtggattttgccgagctgctgctggcgagcttcgagctgctgaccggcaac
gaagccctgcgcgcccattaccagtcgcgcttcaaccagatcctggtcgacgaattccag
gacaccaaccgcttgcagtaccagtggctgcgctgcctcgccggccccgcggccaccctg
tttgccgtgggtgacgacgaccagtcgatctacgccttccgcggtgcggaaatcggcaac
atgcacgacttcctgcgcgactaccacatcaccgaaccggtccggctggagcagaactac
cgctccaccggcaccatcctcgatgccgccaacgccgtgattgcccacaaccacggccgg
ctgggcaaatcgctgtggaccgacgacgctgccggcgaagccatccgcgtctaccgtggc
tggaacgacgccgacgaagcggaattcgtcgccgaagaagtgcgcctgcgccggcgcgaa
ggcgtcgagctgtcggacatggccgtgctctaccgcagcaatgcccagagccgggcactc
gaacacgccctgttccaggccggcatcgcctaccgggtggtcggcggcctgcgctttttc
gagcgccaggaaatcaagcacgccttggcctacctgcggctggtggccagcccggacgac
gacaatgcgctgctgcgcgtcatcaacgtgccggcgcgcggcatcggtgcccgcaccgtc
gaatcgatccaggcccacgcccgcgaagccggcaccagcctgtggcaggcggcctgccgt
accggcggccgggccgccgccagcgtcggccgcttcgtgcagctgatcgaatcgctgcaa
ggggatgccgcccggctggattttgccggactggtcagccacatcatcgacgccagcgga
ctgcgcgccctgtaccaggccgacaaggacggcgccgaccggctggaaaacctcgatgaa
ctcgtcaacgccgccgtcggtttccagcccgacgatccggcacagaccgtcacggaattc
ctgacccacgcggcgctggaagccggcgaccacgaggccacgcccggcgaaacggcgctg
accctgatgaccgtgcacgcggccaaggggctggaattcgacagcgtgttcgtgaccggg
ctggaagaaggcctgttcccgcacgaacagagtttttccgacccggacgggctggaggaa
gagcgccggctgatgtacgtcgccatcacccgcgcccgccgccggctgacgctgtcgtgc
gcccagtcgcgcatgctgcacggccagtcgcgctatccgctgccgtcgcgcttcctggac
gagattccgctgccgctgctggcgccggtcaacggcagcccggccgcaccacggacggcg
gctccggttccggccgcgccgcgaccggtcaagactaacgtcatactggccggcggactg
cgaatcggccagactgtcgcccatcccaaatttggtatcggcgtcatcgtgcgcgccgaa
ggccagccggatgaagcccgggtcgaggtgaacttcaccgaccacggcagcaaatggctg
gacctgcgctatgcccgcctgacgcccctctga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (32)   

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