KEGG   Linepithema humile (Argentine ant): 105673936
Entry
105673936         CDS       T04898                                 
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase DHX36-like
  KO
K14442  ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
Organism
lhu  Linepithema humile (Argentine ant)
Pathway
lhu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lhu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    105673936
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lhu03019]
    105673936
Enzymes [BR:lhu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     105673936
Messenger RNA biogenesis [BR:lhu03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     105673936
SSDB
Motif
Pfam: Helicase_C OB_NTP_bind DEAD HA2_N HA2_C AAA_22 ResIII nSTAND3 ATPase AAA_19 AAA_14 ATPase_2 NB-ARC RsgA_GTPase T2SSE NACHT PhoH ABC_tran AAA_16
Other DBs
NCBI-GeneID: 105673936
NCBI-ProteinID: XP_012225359
Position
Unknown
AA seq 971 aa
MSRRHGPRGKSHFFTRHSREEQQSQSSESGHGGAYSRRPPGLKGKEIGLYYRNXNREKAQ
RKNTQVLKLLPQVEHRIKSILNDSKIFYNVLPDKRSSFEHSNNYDYISDSQFKRKFLEII
HGDIEHNLAKAMIMESKLQKNSEMDRTLLNEYKEKQTQHDYLNMLKFRMKLPTYHKKLEI
LKLIEDNQVIVISGETGCGKTTQVAQFILDDQLEAGNGSITQIICTQPRRISAISVAERV
AAERAERLGKSVGYQIRLEKIPSREQGSILFCTTGILLQIMKTDPALKSFSHVILDEIHE
RTIESDFIITLLKQILPKRPDLKVILMSATLNSESFSKYYDKCPMIHIPGITYPVQEFYL
EDILSFTGFKFPEPPPEPTGYRKHLKRYKEQQHKHETFLDFILPYVRQLRTEMKYAKHVI
DQLRNPNSENLSLELIEKLVRYICNTKGPGAILIFLPGIMDISKLNRMLLESGCYPSYKY
IIYPLHSRMPTVDQKLIFKEPPHGVRKIIIATSIAETSITIEDVVYVINCGKTKLTRFDV
NKNLQTLEPEWVSLANAKQRRGRAGRVKSGECYHLYSKAREMTFDQYQLPEILRTRLEQI
ILQIKILQLGKVKKFLVNIMDPPDMKTIDLSLDLLRTLNALDKDEHLTPLGYHLAHLPLD
PRTGKMILWASLFSCAEPVFAIAASLTFKDAFYCPLGKEEEANRKKLELGMGQYSDHIVL
AEALRRFENAHRRGNAGQFCREYFLSFNTLKLLSEMKTQFAQYLCEMKFLDSENPSDRNA
NRNSNNIALIKAIVCAGLYPNIAVVRRSTKQGVICWTPEDGCVRTHPSSINNKVEKFPNR
YLTYFTKQRSTAIYLHDTTCISVPILLFAGPTISTRREKGKCVINNINFSENIICEPETV
EVIQELQYALNTLLEYKITHPATVSWSTFEGNLLNAIIELVSQKDEEMGFNDVIGNEDNN
IDEEFTDDNFD
NT seq 2916 nt   +upstreamnt  +downstreamnt
atgtcgcgacgacacggacctagaggaaagtcacatttcttcacacgacatagtagagaa
gaacaacaaagtcaatcatctgaatctggacatggaggtgcttattcacgaagacctcct
ggacttaagggcaaagaaataggattgtattacagaaacnaaaatagagagaaagcacaa
aggaaaaatacacaggttctcaaattattgcctcaagtggagcacagaataaaaagcatt
ttgaatgattcaaagatcttttacaatgtactacccgataaaagatctagttttgaacat
agcaacaattatgattatatttctgattctcaatttaaaagaaaatttttagaaattata
catggtgatatagaacataatcttgccaaagctatgattatggaatcaaaattgcaaaaa
aacagcgagatggacagaacattattaaatgaatataaagaaaaacaaactcaacatgat
tatttaaatatgttaaaatttcggatgaagttacccacatatcataaaaaattagagata
ttaaaacttatagaagataaccaagttattgttatcagcggagaaactggttgtggcaaa
accacacaagttgcacaatttatactagatgatcagttggaagctggaaatggtagcatt
acgcaaataatttgcacgcaacctcgaagaatttctgccatttctgttgccgaacgtgta
gctgcagaaagagcagaaagacttggaaaatccgttggctatcaaatacggcttgaaaag
attccatcacgagagcaaggaagcatactgttttgtactactggtatattattacaaatt
atgaaaactgatccagcgctaaaaagtttttcccatgtaatattagatgaaattcatgaa
cgcacgatagaaagtgatttcatcattacattattaaaacaaattcttccgaaaagacca
gatttaaaagtcatcttaatgagtgcaacattaaattctgaaagtttttcaaaatattat
gacaaatgtccaatgatacatataccaggaatcacctatccagtacaagaattttattta
gaagatattttatcatttacaggatttaaatttcctgagccaccacccgagcccactggt
tacagaaaacatttaaaaagatacaaagaacaacaacataaacatgaaacgtttttagat
tttatactaccgtatgttagacaacttagaactgagatgaaatacgcaaaacacgttatt
gatcaattacgcaatccgaatagtgaaaatctttcattggaactcatagaaaaattagtt
agatatatatgtaatacaaaaggtccaggagctattcttatttttctacctggtataatg
gatatatcaaaactaaatagaatgttgttagaatctggatgttacccaagctataaatac
atcatttatcctcttcattcacgcatgcctacagttgatcagaaacttatatttaaagaa
ccacctcatggagttcgtaaaatcattattgctacttcaattgctgagacgtcaataact
atagaagatgtagtatatgtaataaactgtggaaaaacaaaacttacaagattcgacgta
aataaaaatcttcagaccttagaacctgaatgggtatctttagcgaatgctaaacaaaga
cgcggtcgagccggcagagttaagagtggagaatgttatcatttatattcaaaagctcga
gaaatgacgtttgatcagtatcaattgccagaaatattaagaacacgcttggaacagata
attttgcaaataaaaattttgcaattaggaaaagtaaaaaagttcctagttaatattatg
gatccgccagatatgaaaaccattgatctgtctctcgatttacttcgaacacttaacgct
ctcgacaaagatgaacatttgactcctttaggttatcatttagcacatttaccgcttgat
cctagaacaggcaaaatgattctttgggcttcactgttctcttgtgccgagccagtattt
gctattgcagctagtctcacatttaaagatgctttctattgtccattggggaaagaggaa
gaagctaatagaaagaaattagaactcggtatgggacagtatagtgatcatattgttctt
gcggaagctttacgaagatttgaaaatgcacatcgaagaggaaacgctggccaattttgt
cgagagtatttcctgtcttttaatacactgaagcttctctctgaaatgaagactcaattt
gcacaatatttatgcgaaatgaaatttctggacagcgaaaatccgagtgatagaaatgct
aacagaaattcgaataatatagcgttaataaaagctattgtctgtgcgggattatatcct
aacattgctgttgtaagacgatctactaaacaaggagtgatttgttggacgccggaagat
ggttgtgtacgtacacatccgtcgagtataaataacaaagttgaaaaatttcccaaccga
tatttgacatatttcacaaaacaacgttcgaccgccatatacttacacgatactacatgt
ataagtgtaccaattttgttatttgctggaccgactatatctacaagaagagaaaaaggg
aaatgtgtaattaataatatcaacttctctgaaaatattatttgtgaaccagaaactgta
gaagtgatacaggaactccaatatgctctgaatactttattggaatataagattacacat
ccggcaacagtatcttggtcaacatttgaaggcaacttattaaacgcaatcattgaatta
gtatcacaaaaagatgaagaaatgggttttaatgatgttattggcaatgaagataacaat
attgatgaagagtttactgatgataatttcgattga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (19)   
   Pfam (19)   
All databases (30)   

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