KEGG   Lawsonia intracellularis N343: LAW_00613
Entry
LAW_00613         CDS       T02437                                 
Symbol
rnb
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
lir  Lawsonia intracellularis N343
Pathway
lir03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lir00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LAW_00613 (rnb)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lir03019]
    LAW_00613 (rnb)
   03016 Transfer RNA biogenesis [BR:lir03016]
    LAW_00613 (rnb)
Enzymes [BR:lir01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     LAW_00613 (rnb)
Messenger RNA biogenesis [BR:lir03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     LAW_00613 (rnb)
Transfer RNA biogenesis [BR:lir03016]
 Prokaryotic type
  tRNA degradation factors
   LAW_00613 (rnb)
SSDB
Motif
Pfam: RNB S1 CSD2 OB_RNB TBPIP RNase_II_C_S1
Other DBs
NCBI-ProteinID: AGC50012
Position
complement(729401..731842)
AA seq 813 aa
MKRSQHRSQKTKDNTLGQKTSKIQKHKPKSYITRQSVQPGSKINGLHILSLLYNSDHPLS
SNEIITRLKITKQKKQALELVLNVLQKQGQIVCTKGEKWAIASPMQKVIGTFVVQRSGAA
FVIVDQQNTQKPYSDIFIRPELQNGAWDGDKVQVIVYPTKHGKNFEGQVVQILERPRKEV
IVRVSQKHEKGGVVCYPVDSKLNVLFIVDTSKLPEKPIENELLVIIPTPNTNGELLMGIA
QYSLGVEEDVRVQEKVVKLNYNIPCEFPLHVLKEENVAKDLFIKSKAVFYNVPYQKYDDI
SQCSTAIRQDLRVIDFVTIDGEDAKDFDDAICVYPTDIGWDLWVAIADVSHFVRAGSLLD
SEALARGNSYYFPCSVESMLPEFLSNDFCSLKPKEERLVMATKISFDNDGKTKNVIFFPG
VISSRARLTYEQVHLALEVKEISRLPGGIDTLSMLNNASELAKVLQANRIKRGSLEFDLP
ETRFLINKATRRVIGVIRQERFFSHQLIEELMLAVNEAVATFLHDKQIPFLYRIHPEPDI
ERLEKLFRILATTDLACQLSGSPDAKKLGGILEEAENTPQTFLISRMVLRSMMQAKYSPE
PGEHFGLASPLYCHFTSPIRRYADLLVHRAVKFALGDTQKHIPFGQQLFSIAEQCNSHER
VAQEAEREITKRLSCLVLQGDEGKIFEAIVTGITDFAFFVELISMPIEGMVRLASLKDDW
FEYNQDRQELLGVRTGKRFYLGQRLTVKVSSVNILRLEIEFELHMMQPTSGENIKKGRTK
ARNYYRQKEKVRSSNSSFRKRKKKSSSLHQKGQ
NT seq 2442 nt   +upstreamnt  +downstreamnt
atgaaaagaagtcaacatcgctctcaaaaaacaaaagataatacattgggacaaaagaca
agtaagatacaaaaacataaacctaaaagctatattactcgtcaaagtgttcagccaggt
agtaaaataaatggattacacatactaagcttactatataattctgatcatcctttaagt
agtaatgaaatcattacacgtttaaaaattactaagcaaaaaaaacaagctttagaatta
gtattaaacgtgttacagaaacaaggtcagatagtttgtacaaaaggtgagaagtgggca
atagcatcacctatgcaaaaagttatagggacgtttgtagtacagcgctctggagcagcg
tttgttattgttgatcaacagaatacacaaaagccatattcagatatttttatccgtcca
gaacttcaaaatggtgcatgggatggagataaagttcaagttattgtctatcctactaag
catggtaaaaactttgaaggccaggttgtacagatccttgaaagacctcgtaaagaagtt
attgttcgtgttagccagaagcatgagaaaggaggggttgtttgctatcctgtagactct
aagcttaatgtactattcattgtagacacatcaaagttacctgaaaaacccattgaaaat
gagctattagttattataccaactccaaatacaaatggtgagttattgatgggtattgct
caatactcactgggggttgaagaggatgttcgagtacaagaaaaagttgtgaaacttaac
tataatattccatgtgaatttcctttacatgtattaaaagaggaaaatgttgcaaaagac
ctttttattaagagtaaagcagtattctataatgttccctatcagaaatatgatgatatt
tcacaatgttctacagctataaggcaagatttaagagtaatagactttgtaacaattgat
ggtgaagacgctaaagattttgatgatgctatttgtgtttatccaacagatattgggtgg
gatttatgggttgccattgctgatgtgagtcattttgtcagagcaggttcattattagat
agtgaagcattagcacgagggaattcatattatttcccatgctctgtagaatccatgttg
ccagagtttttatctaatgatttttgtagtttaaagccaaaagaagaacgtttagtaatg
gctacaaaaatttcttttgataatgatgggaaaactaagaatgtaatattttttcctgga
gtgatatcttctcgggcacgtcttacatatgagcaagtacatttagctttggaagttaaa
gaaataagtcgactccctgggggaatagataccctgtcaatgcttaataatgcaagtgag
ttagctaaagtattacaagctaatcgtataaaaaggggaagtttagagtttgatcttcca
gagacacgttttttaattaataaagcaacccgtcgagtcataggagttatacgtcaagaa
cgttttttttctcatcaattaatagaagagcttatgttagctgtaaatgaagctgttgct
acatttcttcatgataaacaaattccttttttataccgtatacacccagagccagatatt
gagcgtctagaaaaactttttcggatattagcgactacagacttagcttgccaattgtca
ggtagtcctgatgcaaagaagttggggggtattttggaagaagcagaaaatactcctcag
acatttttgattagtcgtatggtattacgttcaatgatgcaggcaaaatattctcctgaa
cctggagagcattttggcttagcatctcctttatattgtcattttacatctcctatccgt
cgttatgcagatttacttgtgcatcgagctgttaagtttgctttaggagatactcagaaa
catataccctttgggcaacagctttttagtattgcagaacagtgtaattcacatgaacgt
gtagctcaagaggcagagagagaaattactaagcggttaagttgtcttgtcctacaagga
gatgagggtaaaatttttgaagctattgtcacaggaataacagattttgctttttttgtg
gaattaatatctatgcctatagaaggtatggtaaggcttgcatcgctaaaggatgattgg
tttgagtataatcaggatagacaagaacttcttggtgtaaggacaggaaaacgtttttat
ttaggacaacgtctaactgttaaagtaagttctgtgaatatattaaggttagaaatagag
tttgagttacatatgatgcaacctactagtggagaaaatattaaaaaaggtaggactaag
gcaaggaactattataggcaaaaagaaaaggtaagaagtagcaatagttcttttagaaag
agaaagaaaaaaagttcttctttacatcagaaaggacaatag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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