KEGG T03995: ABN16

Levilactobacillus koreensis: ABN16_03445

Entry

ABN16_03445       CDS       T03995

Name

(GenBank) excinuclease ABC subunit A

K03701

excinuclease ABC subunit A

Organism

lko Levilactobacillus koreensis

Pathway

lko03420

Nucleotide excision repair

Brite

KEGG Orthology (KO) [BR:lko00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    ABN16_03445
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lko03400]
    ABN16_03445
DNA repair and recombination proteins [BR:lko03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     ABN16_03445
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      ABN16_03445

SSDB

Motif

Pfam:

ABC_tran SMC_N AAA_21 UvrA_DNA-bind nSTAND1 AAA_29 AAA_15 DnaJ_CXXCXGXG AAA_16 RsgA_GTPase AAA_23 nSTAND3 cobW NACHT PRK DUF463 MobB AAA_33 RNA12 Cytidylate_kin zf-C2H2_3 Anti-TRAP

Other DBs

NCBI-ProteinID:

AKP64145

Position

complement(753122..755668)

AA seq 848 aa
MTTSEKQREHISVRGGNVHNLKNINVDIPLNQFVAISGPSGSGKSSLAMGILYAEGSRRY
LEALSTYTRRRIGQSKRSQVQEVRHIPSAIALRQRPGVPSERSTVGSMSELFNVVRLIFS
RLGSMVCPNGHRIAPSLKVAQAMDLPGGADSKMGIVTCPECGVEFMAKSAEDFAFNSGGA
CPECHGTGTVQTLDEDRLIGDERLSLAEGVVASWHLPGRNFMPTVAETLGVRIDVPYKDL
TNREKDIVLNGAKKQYPVDFRTSTGRVFHTDNTLYENAHEAVYDSLKTVKSERAIKKVNE
FFHFSVCPTCHGTRLNPELLTQLVGGKNIAEVSDLTLGSLSEWQTAAQNELPAEMKAMAD
VLFKNLTDTLRPLLELGLDYLTLSRNGNTLSTGELQRLQLAKTIRTETTGVLYVLDEPSI
GLHPDNVKGLIRIFRELIAQGNSLVVVDHEVDIIAAADWVIEIGPGSGDAGGQIIAEGTP
LDLTENAQSLIGPYISGQAKIMHDKVPTSQKAGELTTHFEVQNYFNLHDIAVTIPGNEIT
AVTGFSGAGKTSLILDSLVPAIQAANAKVALPKQVTTLETHLKDVVSVDAKPIGKNARST
IATYTTIMDNLRRLFANLPEAKAKKFGLAYFSYNNKQGACEQCGGLGTITLDIQYLPDME
EVCPYCHGARYKDEIQQIRWHGYNIVDLLNLSVREALSVFETVPKIEKQLQLLDEMGLGY
LHLGESTPSLSGGEAQRLKLMSHLNKRQSKTLFIFDEPSVGLHPQDVQTLLGVINSLKVK
GATIIIITHDLDLMANADYLIDLGPKGGQAGGRLMASGDPQQLIKTTKSLTLDYLKAHFE
KFHLVSEI

NT seq 2547 nt +upstreamnt +downstreamnt
atgacaacaagtgaaaaacaacgtgaacatattagtgtacgtggtgggaacgtccataat
ttaaaaaatattaacgtggacattccgttgaatcagtttgtggcgatttcaggtccctcg
ggatccgggaagagttcattggccatggggattttatatgcggaggggtcgcggcggtac
ttggaggcactatccacctataccagacggcgaatcgggcagagcaagcggtcgcaggtc
caggaagtgcggcacattccatccgctatcgctttgcggcaacggccgggagtcccttcc
gagcgctcaacggttgggtcgatgagtgagttatttaacgtcgtgcgcctcatcttctcg
cgccttggctcgatggtttgccccaacggtcaccggattgcgcctagtctgaaagttgcc
caggctatggatctaccgggtggcgccgacagcaagatgggaatcgtgacctgtccggag
tgtggggtcgagttcatggcgaaatccgccgaagactttgccttcaattccggcggtgcc
tgtccagaatgtcatgggacggggacggttcagaccttagacgaggacaggctgattggc
gacgagcgtctcagtctggcagaaggggtcgtggcctcatggcatttgcccggccgaaac
tttatgccgacggtggcagagacgctgggagtacgtatcgacgtgccctacaaggacctc
accaatcgggagaaagacattgtcctcaacggcgccaagaaacagtatcccgtagatttt
cggacctcgaccggacgggttttccataccgacaacacgctgtatgagaacgcccacgag
gcagtctacgattccctgaagacggtgaagagtgaacgggccatcaagaaggtcaatgaa
tttttccacttctccgtgtgcccaacctgtcacgggacgcggctgaatccggagctcttg
acacagttagttgggggtaaaaatattgcagaggtgtctgacctgaccctgggctcactg
tctgagtggcaaactgcggcgcaaaatgagttgcccgctgagatgaaagccatggctgat
gtgctcttcaagaatttgacggatacgttgcgtcccctgctggaacttgggctagactat
ctgaccttatcgcggaacggcaatacgctgtcgaccggagaacttcaacggcttcaattg
gccaagaccatccggacggagacgacgggcgttctgtacgtgttggatgaaccctccatt
gggttacaccccgacaacgttaaggggctcatccgtatctttagagaattgattgcccaa
ggaaattctttggtcgtggtcgatcatgaagtcgacatcattgcggcggccgattgggtg
atcgagattggtcccgggtcgggggatgccggtggtcaaatcattgccgagggaacgccc
ctagatttaacggaaaatgcccagtcattgattggaccttacatttctgggcaagctaaa
atcatgcacgacaaggtgcccactagccagaaggccggcgagctcaccacgcattttgag
gtgcagaattactttaatctacatgacattgccgtgaccattcctggaaacgagattacc
gcggttaccgggttctctggcgctggtaagacgagtctgatcttggacagtctggttccg
gccattcaggcagccaatgccaaggtcgccctgcccaagcaggtgacgaccctggagacc
catttgaaggacgtggtgtccgtggatgccaagccaattgggaagaatgcccgctcgacg
attgccacctacaccaccatcatggataacttgcgccgcctgtttgctaatttaccagaa
gctaaggccaagaaatttggtctcgcttacttctcgtataataacaagcagggggcgtgt
gaacagtgtggcggactgggcaccattaccctcgatattcagtacttgccggacatggag
gaggtctgcccttactgccacggcgcgcggtataaggacgagattcaacagattcgttgg
cacggctacaatatcgtcgacctgctgaacttatcggtccgtgaggcgttaagcgtcttt
gaaacggtccctaagattgaaaaacagctccaattgctggacgaaatgggattgggttac
ctgcatttaggcgaaagcacgccgagcctgtccggtggtgaagcccaacggttaaagctc
atgagtcacttgaataaacgccaaagcaagaccctgtttatcttcgacgagccttccgtc
ggcctgcatccgcaagatgtgcagacactactgggcgtgattaacagcttgaaggtcaag
ggagccacgattatcatcatcacgcacgatcttgatctgatggccaacgccgattatctg
attgatctcggccccaagggtgggcaagccggtggccggttgatggctagtggtgatcca
cagcagttgatcaagacgactaagagtctgacgctggattacctgaaggcacattttgaa
aaattccatttagttagtgagatctag

All links

Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (22)   
   Pfam (22)   
All databases (29)   

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