KEGG   Lysobacter maris: C9I47_1369
Entry
C9I47_1369        CDS       T05495                                 
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
lmb  Lysobacter maris
Pathway
lmb03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lmb00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    C9I47_1369
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lmb03019]
    C9I47_1369
   03016 Transfer RNA biogenesis [BR:lmb03016]
    C9I47_1369
Enzymes [BR:lmb01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     C9I47_1369
Messenger RNA biogenesis [BR:lmb03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     C9I47_1369
Transfer RNA biogenesis [BR:lmb03016]
 Prokaryotic type
  tRNA degradation factors
   C9I47_1369
SSDB
Motif
Pfam: RNase_PH RNase_PH_C S1 PNPase KH_1 KH_2 KhpA-B_KH S1_2 KH_5
Other DBs
NCBI-ProteinID: AWV07071
UniProt: A0A2U9T3L9
Position
1681146..1683254
AA seq 702 aa
MAKITKTFQYGNHQVTLETGEIARQAGGAVIVKMDDTVVLVSAVAAKTAREGQDFFPLTV
DYQEKFYAGGRIPGGFFKREGRATEKETLTARLIDRPIRPLFPEDFKNEVQIIATVMSLN
PEIDADIPALIGASAAMALTGAPFQGPIGAAKVGYKNGEYLLNPTVSELADSELELVVAG
TSSAVLMVESEAKGLSEDVMLGAVMFGHREMQKVINTINEMVVEAGTKSWDWQAPAKNEA
MIADLKTAVGDKLAEAFQVRDKLQRRDAISAIKKDVMEALAGRAEAEGWSGSEMSKEFGE
LEYQTMRSAVLGTKVRIDGRALDTVRPISSKVSVLPRTHGSALFTRGETQAIVVATLGTA
RDGQVIDAVSGEYKEHFLFHYNFPPYSVGECGRMMGPKRREIGHGRLAKRGVLAVMPTME
EFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGDDFVVLS
DILGDEDHLGDMDFKVAGTENGVTALQMDIKIQGITEEIMKTALAQAKAGRLHILGEMAQ
ALTAPRGELSEFAPRLLTLKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIVIAS
VNAAAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISNERV
EKVSDKLKEGDVVKVKVLEVDKQGRIRLSMKAVEEGEGVAAE
NT seq 2109 nt   +upstreamnt  +downstreamnt
gtggcgaaaattaccaagaccttccagtacggcaaccatcaggtcaccctggaaaccggc
gagattgcccgccaggccggcggcgccgtgatcgtgaagatggatgacaccgtcgtgctg
gtcagcgcggttgcggcgaagaccgcccgcgagggtcaggacttcttcccgctgaccgtc
gactaccaggagaagttctacgctggtggccggatcccgggcggcttcttcaagcgcgag
ggccgcgcgaccgagaaggagacgctgaccgcgcgcctgatcgatcgtccgatccgtccg
ctgttcccggaagacttcaagaacgaagtccagatcatcgccacggtgatgtcgctgaac
ccggaaatcgacgccgacatcccggcgctgatcggcgcctcggccgccatggccctgacc
ggcgccccgttccagggtccgatcggcgccgccaaggtcggctacaagaacggcgagtac
ctgctgaacccgaccgtgagcgagctggccgactccgagctggagctggtcgtcgcaggt
acctccagcgcggtgctgatggtcgagtccgaggccaagggcctgtcggaagacgtgatg
ctgggcgcggtcatgttcggccatcgcgagatgcagaaggtcatcaacacgatcaacgag
atggtcgtcgaggccggcaccaagtcctgggactggcaggcgccggccaagaacgaggcg
atgatcgccgacctcaagacggccgttggcgacaagctggccgaggccttccaggtccgc
gacaagctgcagcgccgcgacgcgatctcggcgatcaagaaggacgtgatggaggccctt
gccggccgcgccgaggccgagggctggagcggctcggagatgtcgaaggaattcggcgag
ctcgagtaccagaccatgcgcagcgccgtgctgggcaccaaggtccgcatcgacggtcgc
gcgctcgacaccgtccgcccgatcagctcgaaggtcagcgtgctgccgcgcacccacggc
tcggcgctgttcacccgcggcgagacccaggcgatcgtggtcgccaccctcggcaccgcg
cgcgacggccaggtcatcgacgcggtctccggcgagtacaaggaacacttcctgttccac
tacaacttcccgccctattcggtcggcgagtgcggccgcatgatgggcccgaagcgtcgc
gagatcggccacggccgcctcgccaagcgcggcgtgctggcggtgatgccgacgatggag
gagttcccgtacaccatccgcgtggtgtcggagatcaccgaatcgaacggttcctcgtcg
atggcctcggtctgcggttcctcgttggcgctgatggacgcgggcgtgccgatcaaggcg
ccggtcgccggcatcgcgatgggcctggtcaaggaaggcgatgatttcgtcgtgctgagc
gacatcctcggcgacgaggatcacctcggcgacatggacttcaaggtcgccggtaccgag
aacggcgtgaccgccctgcagatggacatcaagatccagggcatcaccgaggagatcatg
aagaccgcgctggcccaggccaaggccggtcgtctgcacatcctcggcgaaatggcccag
gcgctgaccgcgccgcgtggcgagctgagcgagttcgccccgcgcctgctgaccttgaag
atccatccggacaagatccgcgaggtgatcggcaagggcggttctaccatccaggcgatc
accaaggaaaccggcacccagatcgacatccaggacgacggcaccatcgtcatcgcctcg
gtcaacgccgccgccgcccaggccgccaagagccgcatcgagcagatcacctcggacgtc
gagccgggccgcatctacgaaggcaaggtcgccaagatcatggacttcggtgcattcgtg
accatcctgccgggcaaggacggtctggtccacgtctcgcagatctccaacgagcgcgtc
gagaaggtcagcgacaagctcaaggaaggcgacgtggtcaaggtcaaggtgctggaagtc
gacaagcagggccgcatccgcctgtcgatgaaggccgtcgaggaaggcgagggcgtcgcg
gccgagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (20)   

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