KEGG   Lonchura striata domestica (Bengalese finch): 110474145
Entry
110474145         CDS       T05897                                 
Symbol
THOC5
Name
(RefSeq) THO complex subunit 5 homolog isoform X1
  KO
K13174  THO complex subunit 5
Organism
lsr  Lonchura striata domestica (Bengalese finch)
Pathway
lsr03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:lsr00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    110474145 (THOC5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lsr03019]
    110474145 (THOC5)
   03041 Spliceosome [BR:lsr03041]
    110474145 (THOC5)
Messenger RNA biogenesis [BR:lsr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     110474145 (THOC5)
Spliceosome [BR:lsr03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    110474145 (THOC5)
SSDB
Motif
Pfam: FmiP_Thoc5
Other DBs
NCBI-GeneID: 110474145
NCBI-ProteinID: XP_021393003
Position
15:1813990..1828075
AA seq 710 aa
MSSESSKKRKPKVIRTDGVPAEGKRGKGDTDQETQTLLWRVSTKLEDPSGICMVPSNPPD
VRYYSEESEVDLRDPIKDYELYRETCQELQRLMAEIQELKSRGIKENASEIDERRVQSCV
HFMTLKKLNRLAHIRLKKGRDQTHEAKQKVDAYHLQLQNLLYEVMHLQKEITKCLEFKSK
HEEIELVSLEEFYKEAPPEISRPAITLTEPHQQTLARLDWELEQRKRLAEKYKECLTSKE
KILKEIEVKKEYLSSLQPRLNSIMQASLPVQEYLFMPFDQAHKQYETARHLPPPLYVLFV
QASAYGQACDKKLVVAIEGSVEEAKALYKPPEDSQDDESDSDAEEEQTTKRRRPTLGVQL
DDKRKEMLKRHPLSVTLDLKCKDENVLHLTFHYLMNLNVMTVKAKVTTAMEMTTAISAGD
LLSPDSLLNCLYPGDHGRKTPNPANQFQFDKVGIVTLSDYVTELGHPYVWVQKLGGLHFP
KDQPQHTVAADNSLSASHMELTVKLLRSRLQSRLALHKQFASLEHGVVPVSSECQQLFPT
KIVSRLVKWTAIPYEDYAELPYTKDVIEAGLAEDTHLYYMALIERGTAKLQAAVVLNPGY
STLPPVFSLCLNWKGERNSSNDDNIRAMESEVNVYYKELWGPKPGYQLLTNQLQRLCMVL
DVYLETEPHDPSVEGPKEFPQEKMCLRLVRGPLRLKPFKFNYPQGFFSHR
NT seq 2133 nt   +upstreamnt  +downstreamnt
atgtcctccgagtccagcaagaagaggaagcccaaggtgatccgcacggacggggtccca
gccgagggcaagaggggcaagggcgacacggaccaggagacacaaacactcctctggaga
gtgagcacaaagctggaagatccctcagggatttgcatggtgccttcaaaccctcccgat
gtcaggtactacagcgaggagagcgaggtggatctgcgtgaccccatcaaggactacgag
ctctacagggagacctgccaggagctccagaggctcatggcagagatccaggagctgaag
agccggggcatcaaggaaaatgcctcggagatcgacgagcggcgcgtgcagagctgtgtg
cacttcatgaccctgaagaagctgaaccgcctggcccacatccggctgaagaagggcagg
gaccagacccacgaggcaaagcagaaggtcgatgcctatcacctgcagctccagaacctg
ctctatgaggtgatgcacctgcagaaagagatcaccaagtgcctggaattcaaatccaaa
cacgaggagatcgagctggtgagcctggaggagttctacaaagaggccccccctgaaatc
agccgccctgccatcaccctgaccgagccccaccagcagaccctggcccgcctggactgg
gagctggagcagcgcaagaggctggcagagaaatacaaggagtgcctgaccagcaaggag
aagatcctgaaggagatcgaggtgaagaaggaatatctgagcagcctccagcctcgactc
aacagcatcatgcaggcctccctgcctgtgcaggagtacctgttcatgcccttcgaccag
gctcacaagcagtacgagaccgcccggcacctcccgccgcctctctacgtcctcttcgtc
caagccagtgcctacggacaggcctgtgataagaagttggtggtggccattgaagggagc
gtggaggaagccaaggccctttataagccacctgaggactcgcaggatgatgaaagcgat
tccgacgcagaggaggagcaaacgacgaagcggcgcaggcccaccctgggcgtgcagctg
gacgacaaacgcaaggagatgctgaagagacaccccttgtccgtcaccctggacctgaaa
tgcaaagatgagaacgtgcttcacctgaccttccactacctgatgaacctcaacgtcatg
acagtgaaagccaaggtgaccactgccatggagatgaccacagccatcagtgctggggac
ctgctctcgccagactccctcctcaactgcctctatccaggggaccacgggaggaaaacg
cccaacccggccaaccagttccagtttgataaagtgggcatcgtgaccctgagtgactac
gtgacagagctgggacacccctacgtgtgggtgcagaagctgggtggcctgcatttcccc
aaggatcagcctcagcacacagtggctgctgacaattccctgagtgccagccacatggag
ctgactgtcaagctgctccggagccgcctgcaatcccgcctggccctgcacaagcagttt
gcatccctcgagcacggtgttgtgccagtgtccagcgagtgccagcagctcttccccacc
aaaatcgtctcgcgcctggtgaagtggactgccattccctatgaggattatgctgagctg
ccctacactaaggatgtgatagaggctggcttggctgaggacactcacctctactacatg
gccctgatagagaggggaacagccaagctgcaggcggccgtggtgctgaaccccgggtat
tccacgctgcctcccgtcttcagcctgtgcctgaactggaagggagagcgcaacagcagc
aacgacgacaacattcgggccatggagagcgaggtcaatgtctactacaaggagctgtgg
ggccccaaacctggctaccagctgctgaccaaccagctgcagcgcctgtgcatggtgctg
gacgtgtacctggagacagagccccacgatcccagcgtggaggggcccaaggaattcccc
caggagaagatgtgtctgcgcctggtcaggggtcccctgcgcctgaaacccttcaagttc
aactacccccaggggttcttcagccatcgctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (1)   
   Pfam (1)   
All databases (17)   

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