KEGG   Lactuca sativa (garden lettuce): 111912357
Entry
111912357         CDS       T05352                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 21
  KO
K12858  ATP-dependent RNA helicase DDX23/PRP28 [EC:5.6.2.7]
Organism
lsv  Lactuca sativa (garden lettuce)
Pathway
lsv03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lsv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111912357
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:lsv03041]
    111912357
Enzymes [BR:lsv01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     111912357
Spliceosome [BR:lsv03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    111912357
 Complex C
   U5 SnRNP specific factors
    111912357
SSDB
Motif
Pfam: DEAD Helicase_C ResIII P-loop_SecA
Other DBs
NCBI-GeneID: 111912357
NCBI-ProteinID: XP_052625194
Position
3:complement(45216743..45221829)
AA seq 708 aa
MKRSIGDIGEKLQAKKPVFLSKSEREQLALKRRQDEFEERKRQSGQLLLQNNRNSSSSKP
PPSSDDASRNNRFSRDYDRDCYRRDRDIDRDRERERERERDSERRNRDRERDEENKARER
ACLEKLAEREREKELDAIKEQYLGSKKPKKRVIKPSDKFRFSFDWENTEDTSRDMNILYQ
NSHEARLLFGRGFRAGMDRREQKKLAAKNEKELRDKIRKKCGIEERPEEAAAHRLKEEAA
DIYDTFDMRVDRHWSEKKLEEMTERDWRIFREDFNISYKGSKIPRPMRSWVESKLSTELL
KAVERAGYKTPSPIQMAAIPLGLQQRDVIGVAETGSGKTAAFVLPMLSYITRLPPISEEN
KGEGPYALVMAPTRELAQQIEDETNKFAHYLGIKVVSIVGGRPIKEQAFEISQGCEVFIA
TPGRLKDCLKNQYAVLNQCNYIVLDEADRMIDLGMEPEVVEVLDAMPSSNFKPENEDEEL
DEKRIYRTTYMFSATMPPAVERLARKYLRNPVMVTVGTAGKANDLITQHVMMVKESEKMP
RLQELLDEVVDKKAIVFVNTKITADHVSKKLEISGYCVTTLRGGKSQEQRETSLEGFRTK
RFNVLVATDVAGRGIDIPDVAHVINYDMPGKIEMYTHRIGRTGRAGKTGIATTFLTLHDT
DVFYDLKQMLTQSNSYVPPELARHEASKFKPGSIPDKPTRWNNTVFTH
NT seq 2127 nt   +upstreamnt  +downstreamnt
atgaagcgttctatcggtgacataggtgagaaactgcaggcaaagaaacccgtatttctc
agtaaatcagagcgagaacaattagccctcaagcgtcgccaagatgaatttgaagaacgg
aagcgccaatccggccagcttctcctccagaacaaccgtaactcttcctcctctaaaccc
cctccatcgtccgacgacgcttcccgtaacaaccggttctctcgtgattacgatcgtgac
tgttatcgccgtgacagagatatagatagggacagggaacgggagagggaaagggaacgc
gattctgagcggcggaaccgcgatagagaacgtgatgaagagaacaaggctagggaaaga
gcttgtttagagaagcttgcagagcgagagcgcgagaaggagctcgatgccatcaaggag
cagtacttgggatcgaagaaacctaagaaaagggttattaaacccagcgataagttccgt
ttttccttcgattgggagaacaccgaggacacttctcgtgatatgaacattctctatcaa
aactctcacgaggctcgtcttctgtttggaagaggtttccgcgctggcatggatcgcagg
gagcagaaaaaattagccgcaaagaacgagaaagagttgagagacaagattaggaagaag
tgtgggattgaggaaaggccagaagaggctgctgctcacagactcaaggaagaggctgct
gacatatacgatacatttgacatgagagtggatcgccactggtctgagaagaaactagag
gaaatgacagagagagattggaggatctttagggaagatttcaacatatcttacaaaggt
tccaaaattcccaggcctatgaggagttgggttgaaagtaaactgagcactgagctgttg
aaagctgttgagagggctggttacaagaccccatctcccattcaaatggctgccattcct
cttggtctccagcaaagagatgtcattggggttgccgagactggttcaggtaaaacagct
gcttttgttcttccaatgttgagttacatcaccagactccctcctataagtgaagaaaac
aagggtgagggaccatacgcacttgtcatggcacctaccagagaacttgcacagcaaatc
gaggatgagactaacaagttcgcccattatctaggcatcaaagttgtttccattgttggt
ggacgcccaattaaagaacaagcatttgagattagccaagggtgtgaagttttcattgct
acacctgggcgacttaaagattgcctgaagaaccaatatgctgttctaaaccagtgtaac
tatattgttcttgatgaggctgaccgaatgatcgacctgggtatggaacccgaagttgta
gaggttctggatgcaatgccatcaagcaacttcaaacccgagaatgaagatgaagaactt
gatgagaaaagaatatacagaaccacttatatgttcagtgccaccatgcctccagctgtg
gagagactagccaggaaatacttgaggaaccctgttatggttacagttggaactgcagga
aaggcaaacgatctcattacacaacatgttatgatggtaaaggaatcagagaaaatgcct
aggctgcaagaattgcttgatgaagttgtggataagaaagccattgtgtttgttaacact
aaaataaccgctgaccatgtatccaagaaactggaaatttcaggttactgtgtgacaacg
ttgcgaggtggcaagtcacaagaacagagggaaacgagtcttgaaggttttaggacaaaa
agattcaatgtattagttgctacagatgttgcagggcgtgggattgatatacctgatgtg
gctcatgtcataaactatgatatgcctggtaaaattgaaatgtatacacatcgtataggg
cgtacaggtcgtgcagggaagacaggtatagctacaacattcttgactcttcatgatact
gatgtgttttatgatttgaagcagatgctgacacagagcaacagttatgtgcctcctgaa
cttgctaggcatgaggcttcaaagttcaagcctggatccattcctgataaaccaactaga
tggaacaacactgtttttactcattga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (4)   
   Pfam (4)   
All databases (19)   

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