KEGG   Labilibaculum antarcticum: ALGA_3725
Entry
ALGA_3725         CDS       T05376                                 
Name
(GenBank) RNA helicase
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
mbas  Labilibaculum antarcticum
Pathway
mbas03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mbas00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ALGA_3725
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mbas03019]
    ALGA_3725
Enzymes [BR:mbas01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     ALGA_3725
Messenger RNA biogenesis [BR:mbas03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     ALGA_3725
SSDB
Motif
Pfam: DEAD Helicase_C ResIII UTP25 AAA_19 Helicase_C_2 AAA_22 P-loop_SecA
Other DBs
NCBI-ProteinID: BAX82017
UniProt: A0A1Y1CNM4
Position
complement(4770295..4771575)
AA seq 426 aa
MKFSQYSFSPDIKRNLEDLGFNRPTDIQFKAIPPIVRGEDVLAIAQTGTGKTAAFAIPII
DKLHKGKKSKSSNGIKCVVMVPTRELAIQITEVFQKIGKHTKVTSFCVFGGVEQAPQIAS
LQDGIDILITTPGRMFDLTNQGFIQLDKVETLVLDEADHMLDLGFIKDIQDLICFLPKNR
QTLFFSATITPKIKKLAYSLVRSAIRIQISPKDPVSKNVEHGVAFVGMDDKRFFLERMIK
EHVESKILVFVRTKVRAERVHKAMQRVGIETQTIHGDREQDDRLIALNAFKTGEVKILIA
TDVSARGIDIPNVDYVVNYDMPDVAENYVHRVGRTGRGVQKGLAISFCDPTEEKKLLADV
EEFTGTEIQVMDISKGDYSATIDFSEDYAKSLKELMNEAEDFLDNPKKKKSKKKVPAKKA
PKKKKK
NT seq 1281 nt   +upstreamnt  +downstreamnt
atgaaatttagtcaatatagtttttcccccgatattaaaagaaatttggaagatttaggt
tttaacagacctaccgatatccaattcaaagccattcccccaattgttcgtggagaagac
gtgcttgcaattgctcaaaccggaacaggaaaaacagctgcatttgcgattcctatcatc
gacaaactgcacaaaggaaaaaagagtaaaagcagcaacggcattaaatgtgttgtaatg
gtgcctacccgcgagctggcgattcaaattaccgaagtttttcaaaaaattggaaaacat
accaaagtaacaagcttttgtgtatttggaggtgttgaacaggctcctcaaatagcgagt
ttgcaagatggaatcgacatactaataactactccaggtagaatgttcgatttaaccaat
cagggatttattcagcttgataaagtagaaacgctggtattggatgaagccgatcacatg
ttggatttaggtttcataaaggacattcaggatttgatctgttttcttccaaagaatcgt
caaaccttgtttttttcagcgaccatcactcctaaaattaaaaaactagcctattcgctg
gttcgaagtgctattcgaattcaaatttcgcctaaagatcctgtatctaaaaatgtagaa
catggtgttgcttttgttggaatggatgacaagcgtttctttttagaacgtatgattaag
gaacatgtagaaagcaagatacttgtttttgtgcgaacaaaagttagagccgaacgtgtt
cacaaagccatgcaacgtgtaggaatagaaacacaaaccattcatggagatcgcgaacag
gatgatcgtttaattgccttaaatgcttttaaaacaggagaagtaaaaatcttgattgca
acagatgtaagtgcacgtggtatcgatattccaaatgttgattatgtggtgaactatgac
atgcctgatgttgctgaaaattacgttcaccgtgtaggtagaacgggtcgtggcgtgcaa
aaaggattggccatctctttctgtgacccaacagaagagaaaaagttattagctgatgta
gaagaatttacaggcaccgaaattcaggtaatggacatctcgaaaggagattattcagcg
accatcgatttttctgaagactacgcaaagagcttgaaggaattgatgaatgaagctgaa
gattttctggataatccaaaaaagaaaaaatctaaaaagaaggtgcctgccaaaaaagct
cctaaaaagaaaaaaaaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

Download RDF
DBGET integrated database retrieval system