KEGG   Mus caroli (Ryukyu mouse): 110300568
Entry
110300568         CDS       T05910                                 
Symbol
Ddx28
Name
(RefSeq) probable ATP-dependent RNA helicase DDX28
  KO
K20096  ATP-dependent RNA helicase DDX28 [EC:5.6.2.7]
Organism
mcal  Mus caroli (Ryukyu mouse)
Brite
KEGG Orthology (KO) [BR:mcal00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:mcal03009]
    110300568 (Ddx28)
Enzymes [BR:mcal01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     110300568 (Ddx28)
Ribosome biogenesis [BR:mcal03009]
 Eukaryotic type
  Other ribosome biogenesis factors
   110300568 (Ddx28)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_22 Helicase_C_2
Other DBs
NCBI-GeneID: 110300568
NCBI-ProteinID: XP_021026449
Ensembl: MGP_CAROLIEiJ_G0031510
UniProt: A0A6P5Q396
Position
8:complement(97142700..97144590)
AA seq 540 aa
MALAGPSRLLSLAVRLLLEPRRNLVVRGSDQSLPVVRVPRALQRRQEQRQSGRGRLQRPV
LVRPGPLLVSARRQELNQPARLTLGRWERAPLASRGWKHRRSRQDHFSIERVQQEAPALR
NLSSRGSFVDLGLEPRVLLALQEAVPEVVQPTSVQSKTIPPLLRGRHLLCAAETGSGKTL
SYLLPLFQRLLRGSDLDSRSSTAPRGLVLVPSRELAEQVQAVAQSLGGYLGLQVIELGGG
LGMSRLKLQLYKRPAADVLVATPGALWKALKSRLISLQHLNFIVLDEVDTLLDESFLELV
DYILEKSPIAESPAELEDPFNPKAQLVLVGATFPEGLNQLLSKVTSPDNLTTITSSKLHC
LMPHVRQTFMRLKGSDKVTELVQILKQQDKANKMEPSGTVLVFCNSASTVNWLGYILDDH
KIQHLRLQGQMPASMRAGIFQSFQKGSQNILVCTDIASRGLDSVHVEVVINYDFPPTLQD
YIHRAGRVGRVGSEVPGSVISFVTHPWDVSLVQKIELAARRRRSLPGLASSVRDPLPQKA
NT seq 1623 nt   +upstreamnt  +downstreamnt
atggctttagccgggccatcgcggctgctgtcgttagcagtacggttgcttctggagcct
cgacggaacctagtggtgcgcggttccgaccagtccttgccagtggtgcgcgttccgcgg
gctctgcagcgacggcaggaacagcgacagagcggccgtgggagattgcagcggccggtg
ctagtgcgtcccggtcccctgctggtctcggcgcggcggcaggagttgaaccagcccgca
cgcctcacgctgggccgttgggagcgagcgccactggcttcccgtggctggaagcatcgg
cgatcgcggcaagaccatttctccatagagcgagtgcagcaagaggcgcccgccctgaga
aacctttcgtcccggggcagcttcgtggacctgggtctggaaccccgagtgctgctggcg
cttcaggaggctgtccccgaagttgtgcagccaacctcagtgcagtcgaaaaccataccc
ccactgcttcgcggccgccacctcctttgcgctgcggaaactggcagtggcaagacgctt
agctacctactgcccctatttcagcggctcctgagagggtcagacctggactcccgcagt
tccacggctcctcgaggcttggttctggtaccttcccgagaactagctgaacaggtgcag
gcagtggcccagtcactgggtgggtacttgggcctgcaggtgatagaacttggcggaggc
ctcgggatgagtaggctcaaacttcagctgtataaacgaccggcagccgatgtgctagtg
gctactccaggggcgctgtggaaggctctgaaaagtcgactgatcagcttacagcatctt
aacttcatagtgctagatgaagtagacacactgttagatgaaagcttcctggaactggtg
gactacatcttggaaaagagccctatagcagaaagtccagccgagttagaagaccccttt
aatcccaaagcccagttagtgctggtgggagccacgtttccagaaggcctaaaccagtta
ctgagtaaagtcactagtccagacaatctgaccaccattaccagctccaagctgcactgt
ctcatgcctcatgtcagacagacatttatgagactgaagggatcagacaaggtaacagaa
ctggttcagatcctcaaacagcaggacaaagcaaataagatggaaccctcgggaactgtc
ctggtattctgcaacagcgccagcacagtgaactggcttgggtacattctggatgaccat
aagattcaacatctaaggctgcaagggcaaatgccagcttcaatgagggcaggtatcttc
cagagtttccagaagggctcccagaacatacttgtctgcacagacatcgcctcccgaggc
ctagacagtgtccacgtggaagtggttatcaattacgatttcccccctaccctgcaggat
tacatccacagagcaggacgggtgggtcgtgtgggcagcgaagtgccagggtccgttatc
agttttgtgacccacccctgggatgtgagcctggttcagaaaattgaactggcagctcgc
cgaaggagaagccttccaggactagcttcttcagtgagggaccctttgcctcaaaaggcc
tga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (17)   

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