KEGG   Mus caroli (Ryukyu mouse): 110305855
Entry
110305855         CDS       T05910                                 
Symbol
Eif4a3
Name
(RefSeq) eukaryotic initiation factor 4A-III
  KO
K13025  ATP-dependent RNA helicase [EC:5.6.2.7]
Organism
mcal  Mus caroli (Ryukyu mouse)
Pathway
mcal03013  Nucleocytoplasmic transport
mcal03015  mRNA surveillance pathway
mcal03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mcal00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110305855 (Eif4a3)
  09122 Translation
   03013 Nucleocytoplasmic transport
    110305855 (Eif4a3)
   03015 mRNA surveillance pathway
    110305855 (Eif4a3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mcal03019]
    110305855 (Eif4a3)
   03041 Spliceosome [BR:mcal03041]
    110305855 (Eif4a3)
   03009 Ribosome biogenesis [BR:mcal03009]
    110305855 (Eif4a3)
   03012 Translation factors [BR:mcal03012]
    110305855 (Eif4a3)
Enzymes [BR:mcal01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     110305855 (Eif4a3)
Messenger RNA biogenesis [BR:mcal03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     110305855 (Eif4a3)
   mRNA cycle factors
    Stress granule specific factors
     110305855 (Eif4a3)
Spliceosome [BR:mcal03041]
 Complex C
  Other components
   EJC/TREX
    110305855 (Eif4a3)
Ribosome biogenesis [BR:mcal03009]
 Eukaryotic type
  90S particles
   Helicases
    110305855 (Eif4a3)
Translation factors [BR:mcal03012]
 Eukaryotic type
  Initiation factors
   eIF-4
    110305855 (Eif4a3)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 AAA_30 AAA_22 TniB Flavi_DEAD
Other DBs
NCBI-GeneID: 110305855
NCBI-ProteinID: XP_021033648
Ensembl: MGP_CAROLIEiJ_G0017495
UniProt: A0A6P5QR93
Position
11:complement(115184333..115195394)
AA seq 411 aa
MAATATMATSGSARKRLLKEEDMTKVEFETSEEVDVTPTFDTMGLXEDLLRGIYAYGFEK
PSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAV
QIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRA
IKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRIL
VKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA
NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNREL
YIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq 1236 nt   +upstreamnt  +downstreamnt
atggcggccacggccacgatggcgacgtctggctcggcgcggaagcggctgctcaaagag
gaggacatgaccaaagtggagttcgagacgagcgaggaggtggacgtgacccccacgttc
gacaccatgggcctgcnagaggacctgctgcgcggcatctacgcctacggttttgaaaaa
ccttcagcgatccagcagcgtgctatcaagcagataattaaagggagagatgtcattgca
cagtctcagtctggcacaggcaagacagccaccttcagtatctcagtgctgcagtgcttg
gatatccaggttcgagaaacccaagctttgatcctggctccaaccagagagttggcagtg
cagattcagaagggtctgctcgctctgggggattacatgaacgtgcagtgccatgcctgc
atcgggggcaccaacgtcggggaggacatccggaagctggactacgggcagcatgtggtg
gcgggcacgccgggacgcgtctttgatatgatccgccgtagaagtttacggacacgggct
atcaagatgctggttttggatgaggctgatgaaatgttaaacaaaggtttcaaggagcag
atctatgatgtgtacaggtacttgccgccagccacacaggtcgtcctcatcagcgccaca
ctgcctcatgagatcctggagatgaccaacaagttcatgaccgaccccatccgcatcctg
gtgaagcgtgatgagttaactctggaaggcatcaaacagttctttgtggccgtggaaaga
gaggaatggaagtttgatactctatgtgatctctacgacacgctgaccatcacccaggcc
gtcatcttctgcaacaccaagaggaaggttgactggctgacagagaaaatgagagaagcc
aatttcactgtgtcgtccatgcatggagacatgccccagaaagaacgagagtctatcatg
aaggagttccggtcaggtgccagccgggtgctcatctccacagacgtctgggctcggggc
ctggatgtccctcaggtgtcccttatcattaactatgacctgcccaacaacagagaactg
tacattcacagaattgggagatcgggtcggtatggacgaaaaggtgtggccatcaatttt
gtgaagaatgatgacatccggattctcagggacatcgagcagtactactccacccagata
gacgagatgcccatgaacgtggctgacctcatctga

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (25)   

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