KEGG   Momordica charantia (bitter melon): 111006662
Entry
111006662         CDS       T05045                                 
Name
(RefSeq) protein CLP1 homolog
  KO
K14399  polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
Organism
mcha  Momordica charantia (bitter melon)
Pathway
mcha03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:mcha00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    111006662
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mcha03019]
    111006662
Enzymes [BR:mcha01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.1  Phosphotransferases with an alcohol group as acceptor
    2.7.1.78  polynucleotide 5'-hydroxyl-kinase
     111006662
Messenger RNA biogenesis [BR:mcha03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Pre-mRNA cleavage factor IIm (CFIIm)
     111006662
SSDB
Motif
Pfam: CLP1_P Clp1 CLP1_N nSTAND3 CbiA AAA_22 SRPRB ATP_bind_1 AAA_29 DUF1611 FtsK_SpoIIIE
Other DBs
NCBI-GeneID: 111006662
NCBI-ProteinID: XP_022134389
UniProt: A0A6J1BYM6
Position
Unknown
AA seq 438 aa
MAYGGPPTAAGSGSTSSIRQVKLDRESELRIEVGNDSPLRLRLVSGNAEIFGTELPPEIW
LTLPPRLKIAVFTWYGATLEMDGATETDYTADETPMIGYVNAHAILEGRRSRARASSSDD
SGSTQGPRVIVVGPTDSGKSTLSRMLLSWAAKQGWKPTFVDLDIGQGSITIPGCIAATPI
ELPIDPVDGIPLEMPLVYFYGHTTPSNNVDLYKVLVKELAEVLERQFTGNAESRAAGMVI
NTMGWIEGIGYELLLHAIDTLNANVVLVLGQEKLWSMLKDVLKNKPNVDVVKLQKSGGVV
SRNAKFRQKARSYRIREYFYGPANDFSPHSNIANFNDLFIYRIGGGPQAPRSALPIGAEP
AADPTRLVPVNINRDLLHLVLAVSFAKEPDEIMSSNVAGFVYVTDIDIQRKKLTYLAPSA
GELPGKYLIMGTLTWLET
NT seq 1317 nt   +upstreamnt  +downstreamnt
atggcgtatggtggtccacccacagcggctggctcgggatcgacttcttcaatcagacag
gtcaagctggatagagagagcgagctcaggattgaagttggaaacgactcacctctccgt
ttgcggctggtatctggtaatgctgagatcttcggcacggagcttcctcctgaaatatgg
ctcaccttaccaccgaggctgaaaattgccgttttcacttggtatggagccacgcttgaa
atggatggtgcaactgaaactgattatacggcagatgagacacccatgattggttatgtg
aatgcccatgccatacttgaaggaagaagaagccgtgctagagcatcatcatctgatgac
tctggttctactcagggtccacgggtaattgttgtggggcctactgactcaggtaagagc
accttgtctaggatgcttcttagttgggctgcaaaacagggttggaagcctacatttgtg
gacttggatattggccaaggatctataacaattcctggatgcattgctgctacccctatt
gagttgcccattgatcccgttgatggaatcccacttgaaatgcccctggtgtacttttat
ggacacactactccaagcaataatgttgatctgtacaaagtgcttgtgaaggagcttgcc
gaagtgctggagaggcaatttactggcaatgcagaatctcgagctgctggtatggttatc
aacacaatgggatggattgagggtattggctatgagctgcttctacatgcaattgacacg
ctgaatgccaatgtagtcttggttttgggtcaggagaaactttggagcatgcttaaagat
gtactaaagaacaagcctaatgtggatgttgtaaaactccaaaagtcaggtggtgttgta
tccagaaatgccaaatttcgtcaaaaggccaggagttacagaataagggaatatttttat
ggccctgcaaatgatttctcaccacactccaacattgcaaactttaacgatctattcatt
tatcgcattggcggtggacctcaggcacctcgttcggcactacctattggtgcagaacct
gctgcagaccccacaagattagtgcctgtcaacattaatcgagatttgctccatttggtt
cttgctgtttcatttgccaaagaacctgatgaaattatgtcaagcaatgttgctggattt
gtgtatgttactgacattgacatccaaaggaagaaacttacatatcttgcgccatcggca
ggggaacttccaggcaaatatttgattatgggaactttgacctggcttgagacctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (11)   
   Pfam (11)   
All databases (26)   

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