KEGG   Methylacidimicrobium sp. AP8: MTHMO_1284
Entry
MTHMO_1284        CDS       T06915                                 
Symbol
rpoN
Name
(GenBank) DNA-directed RNA polymerase specialized sigma subunit
  KO
K03092  RNA polymerase sigma-54 factor
Organism
meap  Methylacidimicrobium sp. AP8
Pathway
meap02020  Two-component system
meap02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:meap00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    MTHMO_1284 (rpoN)
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    MTHMO_1284 (rpoN)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:meap03021]
    MTHMO_1284 (rpoN)
Transcription machinery [BR:meap03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     MTHMO_1284 (rpoN)
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID HTH_Tnp_ISL3 HTH_23 MarR LacI Sigma70_r4 HTH_17 HTH_AsnC-type MarR_2 HTH_24 HTH_Crp_2 HTH_3 HTH_IclR HTH_36 HTH_20 HTH_11 HTH_38 HTH_28 HTH_29 Sigma70_r4_2 CENP-B_N Xre-like-HTH
Other DBs
NCBI-ProteinID: CAB4243622
UniProt: A0A7R8QG11
Position
I:complement(1237998..1239386)
AA seq 462 aa
MPSLGLFQSVRLSQSLSPQMQQSLALLQAPAVELRSVIAQELLNNPVLEEEVETAAPEEG
RESSLEALAEVEESWRDYLGPTETKIAVSDDSEEKHQYFFDSQAVPETLRDFLARQLTAS
TDDPELVRAGIEIIGNLDDRGYLRTDLEEVAGLAGVPQEKAEEALRLVQSFDPAGVAARS
LKECLLLQLRRLGKEEEVEGKIVECHLELLARKKFSELAKLLRVSVPRITTAANLIRTLQ
PNPGGSFRRTEREAVIEVDLRVEKVDGTWTVIANEAAVPRLRINGAYKDLLHASGQDPSL
RNYLREKIQSGRFLLKCLRLRQQTLSEVASAVVACQTEFFDHGLSRLRPLTMSEIARRIG
IHETTVSRAIANKYIETPHGVFELKYFFRPGYQTAKGDRLSNQTIKAAIEEMVRKEDPRN
PLSDQDIVEAFRQKGIVLARRTVAKYRTALKILPSHLRKSAA
NT seq 1389 nt   +upstreamnt  +downstreamnt
gtgccttccctggggcttttccaatccgtccggctgagccagtctctctcgccgcagatg
cagcagtcgctggctctgctgcaggcccccgccgtggagcttcgctcggtgatcgcgcag
gagctcttgaacaatcccgtgctggaggaggaggtggaaacggccgcgccggaagagggg
cgggagagctcgctcgaagccctagccgaggtcgaggagtcgtggcgggactacctcggt
cctacggagaccaagatcgcggtttccgacgattccgaagaaaaacaccagtacttcttc
gactcgcaggcggtccccgagacgctgcgcgacttcctggcgcgccagctcacggcctcg
acggacgatccggagctggtccgcgcaggaatcgaaatcatcggcaatcttgatgaccgg
ggatacctgcggaccgacctggaggaggtggccggccttgccggagttcctcaggagaaa
gccgaagaggctctccgattggtgcagagcttcgatccggcgggtgtggccgcccgcagc
ctaaaggagtgcctcctgctccagctccgccgcctcggaaaggaagaggaggtggagggg
aaaatcgtggagtgccacctcgagctccttgcgcggaagaaattctccgagcttgcgaag
ctcctccgcgtctccgtcccccgcatcacgaccgccgccaacctcatccggacgctccaa
ccgaatccgggcgggagcttccgccgaaccgagagggaggcggtcatcgaggtcgatctg
cgcgtcgaaaaggtcgacggcacgtggacggttatcgccaacgaggcggccgttccccgt
ctacggatcaacggagcgtacaaagatctgctccatgccagcgggcaggatccgagcctg
cggaactaccttagagagaagattcaatccggccgattcctcctgaaatgcctacgcctg
cgccagcagacgctctccgaggtggcttctgcggtagtcgcctgccaaacggaatttttc
gaccacggcttgagccgcctccggccgctcaccatgagcgagatcgcccgccgcataggc
attcacgagacgacggtcagccgcgcgatcgccaacaaatacatcgaaacccctcatgga
gtcttcgagctcaagtacttcttccgcccaggctaccagacggccaagggcgaccgcctc
tccaaccagaccatcaaggcggcgatcgaggagatggtgcgcaaagaggacccgaggaat
cccctgtcggaccaggacattgtcgaagccttccggcagaaggggatcgtgctcgcccgc
cggacggtggccaagtaccggaccgcgctcaagatccttccttcccacctccggaagtcg
gcggcctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (24)   
   Pfam (24)   
All databases (32)   

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