KEGG   Methylophaga nitratireducenticrescens: Q7A_602
Entry
Q7A_602           CDS       T02055                                 
Name
(GenBank) excinuclease ABC subunit A
  KO
K03701  excinuclease ABC subunit A
Organism
mej  Methylophaga nitratireducenticrescens
Pathway
mej03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:mej00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Q7A_602
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mej03400]
    Q7A_602
DNA repair and recombination proteins [BR:mej03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Q7A_602
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Q7A_602
SSDB
Motif
Pfam: UvrA_inter UvrA_DNA-bind ABC_tran SMC_N AAA_29 AAA_16 AAA_23 nSTAND1 AAA_22 RsgA_GTPase DnaJ_CXXCXGXG Viral_helicase1 APS_kinase AAA_21 NACHT AAA_25 cobW
Other DBs
NCBI-ProteinID: AFI83448
UniProt: I1XGC9
Position
608473..611292
AA seq 939 aa
MKKISIRGARTHNLKNIDLDLPRDALIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLSMMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLLARAGEPRC
PTHHLPLEAQTVSQMVDTVLAMPEGKRLMLLAPVIQDRKGEHLSVFEGLRAQGFVRARVN
GEVVELDDPPELELRKKHTIEAVVDRFKVREDLQQRLAESFETALKLADGVAKVVSMDDD
SDQTLFSARFACSECGYSIAELEPRMFSFNNPAGACPTCDGLGIKQFVDPSRVVAHPELS
LAAGAIRGWDRRNAYYYQMILSLADHFQFDIDAAFDSLPENVRQVILYGSGRTEIDFSYI
SDRGKRVSRKHAFEGIIPNLQRRYHETESGSVRDELAKFHSIRACPDCHGTRLREASRNV
FINETNLPEITAMPIGEATEFFQQLELPGKRGEIASKIVSEISARLSFLVNVGLDYLSLA
RSADTLSGGEAQRIRLASQIGAGLVGVMYILDEPSIGLHQRDNDRLLGTLTRLRDLGNTV
IVVEHDEDAIRSADYVLDIGPGAGVHGGAIVAQGTPEDIMKSEHSLTGQYLSGRRKIEIP
AKRETAHAGKSIGLRGACGNNLKHVDVDIPIGLMTCVTGVSGSGKSTLINETLLKLTSKT
LNGASEEPAPHTDILGLEQLDKVVAINQSPIGRTPRSNPATYTGLFTPIRELFAGTQEAR
ARGYGPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDIYVPCDVCKGKRYNRETLDIRYKG
KTITEVLDMTIEDANVFFENIPVVAKKLQTLIDVGLTYIKLGQNATTLSGGEAQRVKLAK
ELSKRDTGKTLYILDEPTTGLHFYDIEQLLKVLHHLRDRGNTIVVIEHNLDVVKTADWVI
DMGPEGGAGGGEVIAVGTPEQITEYPRSHTGHYLKPLLK
NT seq 2820 nt   +upstreamnt  +downstreamnt
atgaaaaaaatcagtattcgcggcgcccgtacgcacaaccttaaaaacatcgatctggac
ctgcccagagatgcactgattgtgattaccggcttgtccggatcaggcaaatcgtcactg
gcttttgataccttatatgcggaaggtcagcggcgctatgtggaatcgctttcagcctat
gccagacagtttttatcgatgatggaaaaacccgatgttgaccatattgagggactttcc
ccggccatttcgattgaacagaagtcgacatcacataatccacgttctactgtcggtacc
atcactgaaatctatgattatttaagattgttgttggccagagccggtgaaccgcgctgc
ccaacgcatcatctgccgctggaagcacaaaccgtgagtcagatggtagacaccgtatta
gccatgccggaaggcaaacgtttaatgttattggctccggtaattcaggatcgcaagggc
gaacatctgtcagtgtttgaagggttgcgggcccaagggtttgtgcgtgccagagtcaat
ggtgaagtcgttgaactggacgatccaccagagcttgaattacgcaaaaaacacacgata
gaagccgtggttgaccgttttaaagtacgcgaagatctgcaacaacgtctggcggaatcg
tttgaaacggctttgaaattagccgatggtgtggccaaagtcgtctcgatggatgatgac
tcggatcaaacattattttcggcgcgttttgcctgctctgagtgtggctattcaatagcc
gaactcgaaccgcgcatgttttcctttaataatccggccggtgcctgcccgacctgtgat
ggtttaggcatcaagcaatttgttgatccttcccgagtcgttgcacaccctgaacttagt
ttggcggccggtgccattcgcggatgggatcgtcgtaatgcctattactaccaaatgatt
ctatcgctagccgatcactttcaatttgatattgatgcggcatttgactcgttacctgaa
aatgtccgccaagtgattttgtatggcagtggtcgtaccgaaattgatttcagttatatc
agtgatcgtggcaaacgagtaagccgaaaacatgctttcgaaggtattattcccaacctg
caacgccgttatcatgagactgaatcgggtagtgttcgtgatgaactggcgaaattccat
tcaatcagagcctgtccggattgccatggcacccgcttacgggaagcctcacgtaatgta
tttatcaatgaaaccaatttgccagaaataacggcgatgccgattggtgaagccaccgag
tttttccagcaactagagctgcctggcaaacgtggcgagatagccagcaagatagtcagc
gagatcagtgcccgtctgagttttctggttaatgtcgggctggattacctgtcgctggcg
cgcagtgcagataccttatccggtggtgaagctcagcgtatccggctggccagccagatt
ggtgccggtctggtaggagtgatgtatatccttgatgaaccctccatcggtctgcaccag
cgtgacaatgatcgtcttttgggaacactgacccggctgcgtgatttgggaaatacggtg
attgtggttgaacatgatgaggatgcgattcgcagtgccgattatgtgctggatatcggg
ccgggtgccggggtccatggtggtgcaattgtggcgcagggcacgccagaagatattatg
aaaagtgagcattcgcttaccggacaatacctgtctggtcgtcgaaaaattgaaatccca
gctaaacgcgaaaccgcccatgccggtaaatccattggtctgcgtggtgcctgcggtaat
aacctgaaacatgtcgatgtcgatattccgatcggtctgatgacttgtgttaccggcgtg
tctggttcaggaaagtccaccttaattaacgaaacgctgctgaagctgacttccaagaca
ttaaatggtgcttccgaagaacccgcaccgcataccgatattctcggcctggaacaatta
gataaagtcgtggcgattaatcaaagcccgattggtcggacgccgcgctctaatcctgct
acctacaccggtcttttcaccccgatacgagagctatttgcgggtactcaggaagcacgg
gccagaggttatggacctggaagatttagctttaatgttaaaggcggccgctgtgaagcc
tgtcagggtgacggtttgattaaggtcgaaatgcactttttacccgatatttatgtgcct
tgtgatgtctgtaaaggtaagcgctacaatcgtgaaacccttgatattcgctataaaggt
aaaaccatcactgaagtgctggatatgactatcgaagatgccaatgtgttttttgaaaat
attccggtggtggcgaaaaaactgcaaaccttgattgatgtcggcctgacctatatcaag
ctgggtcagaatgccacgacgctttccggcggtgaagcgcaacgggtcaaactggccaaa
gaattatccaaacgtgataccggtaaaacgctgtatatccttgatgagccgaccacaggg
ctgcatttttacgatattgagcaactgctgaaagtcttgcatcatttacgcgatcggggt
aacactatcgtggtgattgagcataatctggatgtggtaaaaaccgccgactgggtaatt
gatatggggcctgagggtggcgctggcggtggtgaagtgattgctgtcggcacgccggag
caaatcactgaatatccacgttcgcataccggacattatctgaagccgttattaaaatga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (54)   
   KEGG ORTHOLOGY (1)   
   RefGene (51)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (17)   
   Pfam (17)   
All databases (76)   

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