KEGG   Allocoleopsis franciscana: Mic7113_2601
Entry
Mic7113_2601      CDS       T02374                                 
Name
(GenBank) DNA/RNA helicase, superfamily II
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
mic  Allocoleopsis franciscana
Pathway
mic03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mic00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Mic7113_2601
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mic03019]
    Mic7113_2601
Enzymes [BR:mic01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     Mic7113_2601
Messenger RNA biogenesis [BR:mic03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Mic7113_2601
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 UTP25 ERCC3_RAD25_C UvrD-helicase AAA_22 P-loop_SecA
Other DBs
NCBI-ProteinID: AFZ18393
UniProt: K9WDT1
Position
2989529..2990830
AA seq 433 aa
MTFRNLGLSTDLLRAVADSGYTEPTPIQQQAIPAVLQGKDVFASAQTGTGKTAGFTLPLL
QLLNTTNPNKVHRTPRALILTPTRELADQVNDSVKTYGKYLSLRSAVVYGGVGIKAQIQT
LRRGVDILVATPGRLLDHVGQKTVDLSQVEILVLDECDRMLDMGFIRDIRKILAILPSSR
QTLMFSATFSKPIQQLANTLLKSPTQIEVAPRNTAAQQVEQVVHPVDRDRKRELLSYMIG
FHNWKQVLVFTRTKHGANRLAEQLAKDGLKSTAIHGNKSQAARTRALQDFKQGKVRVLVA
TDVASRGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAGNEGRAVSLVCGDEYPFLKDIE
RLLNQTLAKEVIPGYEPTSKSQPGADQPTKPQRSNQRRSNRAKSQTPSKPTRTQKPIKSG
TPARKRRPTASSV
NT seq 1302 nt   +upstreamnt  +downstreamnt
atgacatttcgtaacctcggtctttcgaccgacttgcttcgtgctgttgctgactctggc
tacacggagccaaccccgattcagcagcaggccattcccgccgtcctgcaaggaaaagac
gttttcgccagtgcccaaactggaacaggtaagacagcaggctttaccctgcctctactg
caactcctgaacaccaccaaccccaacaaggtacatcgcacgcctcgcgccctcatcctc
acccccactcgtgaactggcagatcaggttaacgatagcgtcaaaacctatggcaaatac
ctgtccctgcgctcggcagtcgtttatggtggcgtcggaattaaagcacaaattcaaaca
ctgcgccggggagttgatattctagtcgccacgccgggacggttactcgaccacgttggg
caaaagactgtcgatctctctcaagtggagatactggtgctggatgaatgcgatcgcatg
ttagacatgggcttcatccgcgacatccgcaaaatattggcaattctcccctcatcccgg
caaacgctgatgttctctgccacattctctaaaccgattcagcagcttgccaacaccctg
ctcaagtctcccactcagatcgaagtggctccccgtaatactgccgcacagcaagtggaa
caggtggttcatcctgtcgatcgcgatcgcaagcgagaactgctttcttatatgatcggc
ttccataactggaaacaggtgctagtcttcacccgcacaaaacacggagccaaccgtctt
gccgagcagcttgctaaagatgggctgaaaagcactgccattcatggcaacaaaagtcaa
gccgcccgcacccgcgccctgcaagactttaagcaagggaaagtgcgggtattagtcgcc
accgacgtagcctcacggggtctagatatcgatcagctccctcacgtagttaactatgaa
ctgcccaatgtcccagaagactacgtgcatcgcattggtcgcacaggtcgcgctggaaac
gaagggcgagccgtttccctggtctgtggcgatgaatatccattcttaaaggatatcgaa
cggttgctcaatcaaacccttgccaaggaagtgattccaggatacgagccaacctcaaaa
tcccagcctggggcagaccagccgacgaagcctcagcgatcgaatcaacgtcgcagtaat
cgtgcaaagtcccagacaccatccaaacccacccgcacccaaaagcccataaaatcaggg
actccggctcggaaacgacgacccactgcctcatcggtttga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (30)   

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