KEGG   Mus musculus (house mouse): 13018
Entry
13018             CDS       T01002                                 
Symbol
Ctcf
Name
(RefSeq) CCCTC-binding factor
  KO
K23195  transcriptional repressor CTCF
Organism
mmu  Mus musculus (house mouse)
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:mmu03000]
    13018 (Ctcf)
   03036 Chromosome and associated proteins [BR:mmu03036]
    13018 (Ctcf)
Transcription factors [BR:mmu03000]
 Eukaryotic type
  Zinc finger
   Cys2His2 others
    13018 (Ctcf)
Chromosome and associated proteins [BR:mmu03036]
 Eukaryotic type
  Chromatin remodeling factors
   Other chromatin remodeling factors
    13018 (Ctcf)
SSDB
Motif
Pfam: zf-H2C2_2 zf-C2H2 zf-C2H2_4 zf-C2H2_16 zf-H2C2_5 zf-C2H2_jaz zf-C2H2_REST Zf-C2H2_ZNF451_C zf-C2H2_ZN142 zf-C2H2_7th_ZNF462 zf-met zf-C2HE zf-C2H2_6 Zf-C2H2_ZNF451 zf-C2H2_15 zf-WIZ
Other DBs
NCBI-GeneID: 13018
NCBI-ProteinID: NP_851839
MGI: 109447
Ensembl: ENSMUSG00000005698
UniProt: Q61164
Position
8:106351135..106409554
AA seq 736 aa
MEGEAVEAIVEESETFIKGKERKTYQRRREGGQEEDACHLPQNQTDGGEVVQDVNSSVQM
VMMEQLDPTLLQMKTEVMEGTVAPEAEAAVDDTQIITLQVVNMEEQPINIGELQLVQVPV
PVTVPVATTSVEELQGAYENEVSKEGLAESEPMICHTLPLPEGFQVVKVGANGEVETLEQ
GELPPQEDSSWQKDPDYQPPAKKTKKTKKSKLRYTEEGKDVDVSVYDFEEEQQEGLLSEV
NAEKVVGNMKPPKPTKIKKKGVKKTFQCELCSYTCPRRSNLDRHMKSHTDERPHKCHLCG
RAFRTVTLLRNHLNTHTGTRPHKCPDCDMAFVTSGELVRHRRYKHTHEKPFKCSMCDYAS
VEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKRHMRTHSGEKPYECYICHARFTQSG
TMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYIEQGKKCRYCDAVFHERY
ALIQHQKSHKNEKRFKCDQCDYACRQERHMIMHKRTHTGEKPYACSHCDKTFRQKQLLDM
HFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENGGETKKSKRGRKR
KMRSKKEDSSDSEENAEPDLDDNEEEEEPAVEIEPEPEPQPQPPPPPQPVAPAPPPAKKR
RGRPPGRTNQPKQNQPTAIIQVEDQNTGAIENIIVEVKKEPDAEPAEGEEEEAQAATTDA
PNGDLTPEMILSMMDR
NT seq 2211 nt   +upstreamnt  +downstreamnt
atggaaggtgaggcggttgaagccattgtggaggagtctgaaactttcattaaaggaaaa
gaaagaaagacttaccagagacgccgggaagggggccaggaagaagatgcttgccacctg
ccccagaaccagacagatgggggtgaggtggtccaggatgtcaacagcagtgtacagatg
gtaatgatggaacagctggatcctacccttctccagatgaagactgaagtcatggagggt
acagtggctccggaagcagaggctgcagtggacgatacccagatcataaccttgcaggtt
gtaaatatggaggaacagcccattaacataggagagcttcagcttgtccaagtacctgtt
cctgtgacggtacctgttgctactacttcagtagaagaacttcagggggcttatgagaat
gaagtgtctaaagagggccttgcagaaagtgaaccgatgatatgtcacaccttacctttg
cctgaaggatttcaggtggtgaaagtgggggccaatggagaagtggagacactagagcag
ggcgagcttcctcctcaggaagactctagctggcaaaaagacccagactatcagccacca
gccaaaaaaacaaagaaaaccaaaaagagcaaacttcgttacacagaagagggcaaagac
gtggatgtgtctgtgtatgattttgaggaagaacagcaggaaggactgctgtctgaggtt
aatgcagagaaagtagttggtaatatgaagcctccgaagccaacaaaaattaaaaaaaaa
ggtgtaaagaaaacattccagtgtgagctttgcagttacacatgtccccggcgttcaaat
ttggatcgtcacatgaaaagccacactgatgagagaccacacaaatgccatctgtgtggc
agagcattcagaacagtgaccctcctgaggaatcatctgaacacacacacaggtactcgt
cctcacaagtgcccagactgcgatatggcctttgtgaccagtggagaattggtgcggcat
cgtcgttataaacacactcatgagaaaccatttaagtgttccatgtgtgattatgccagt
gtagaagtcagcaaattaaaacgacacattcgctctcatactggagagcgcccgttccag
tgcagtttgtgcagttatgccagcagggacacatacaagctgaaaaggcatatgagaacc
cattcaggggaaaaaccttatgaatgttatatttgtcacgctcggtttacccagagtggt
accatgaagatgcacattttacagaagcacacagaaaatgtggccaaatttcattgtccc
cattgtgacactgtcatagcccgaaaaagtgatttgggtgtccacttgcgaaagcagcat
tcctatattgaacagggcaaaaaatgtcgctactgtgatgctgtgtttcatgagcgatat
gctctcatccagcatcaaaaatcacacaaaaatgagaagcgcttcaagtgtgaccagtgt
gattatgcttgtagacaggagcggcacatgatcatgcacaagcgcactcacacgggggag
aagccttatgcctgcagccactgcgacaagaccttccgccagaaacagctcctcgacatg
catttcaagcgctatcatgatcccaactttgtccctgctgcctttgtctgttccaagtgt
gggaaaacattcacccgccggaacacaatggcaagacatgcagataactgtgctggtcca
gatggcgtagagggggaaaatggaggggagacaaagaagagcaaacgaggaagaaaaaga
aagatgcgatctaaaaaagaagactcctctgacagtgaagaaaatgctgagccggatctc
gatgacaatgaggaggaggaggagcctgctgtagaaattgaacctgagccagagcctcag
ccccagcctccgcctccacctcagcctgtggccccggcccccccacctgccaagaagaga
agggggcgacctcctggaagaaccaaccagcccaaacagaaccagccaacagccatcatt
caggtcgaagatcagaatacaggtgcaattgagaacattatagttgaagtcaaaaaggag
ccagatgccgagcctgcggagggggaagaagaggaggctcaggcagccaccacagacgcc
cccaacggagacctcacgcctgagatgatcctcagcatgatggaccggtga

  All links  
Gene (31)   
   RefGene (24)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (3)   
   OC (1)   
Protein sequence (19)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (17)   
DNA sequence (49)   
   RefSeq(nuc) (21)   
   GenBank (14)   
   EMBL (14)   
Protein domain (16)   
   Pfam (16)   
All databases (115)   

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