KEGG   Mus musculus (mouse): 13018Help
Entry
13018             CDS       T01002                                 

Gene name
Ctcf, AW108038
Definition
(RefSeq) CCCTC-binding factor
  KO
K23195  transcriptional repressor CTCF
Organism
mmu  Mus musculus (mouse)
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:mmu03000]
    13018 (Ctcf)
   03036 Chromosome and associated proteins [BR:mmu03036]
    13018 (Ctcf)
Transcription factors [BR:mmu03000]
 Eukaryotic Type
  Zinc finger
   Other Cys2His2 zinc factors
    13018 (Ctcf)
Chromosome and associated proteins [BR:mmu03036]
 Eukaryotic Type
  Chromatin remodeling factors
   Other chromatin remodeling factors
    13018 (Ctcf)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: zf-H2C2_2 zf-C2H2 zf-C2H2_4 zf-H2C2_5 zf-C2H2_jaz zf-met zf-C2H2_6 C1_1
Motif
Other DBs
NCBI-GeneID: 13018
NCBI-ProteinID: NP_851839
MGI: 109447
Ensembl: ENSMUSG00000005698
Vega: OTTMUSG00000017298
UniProt: Q61164
Position
8; 8 D3
AA seq 736 aa AA seqDB search
MEGEAVEAIVEESETFIKGKERKTYQRRREGGQEEDACHLPQNQTDGGEVVQDVNSSVQM
VMMEQLDPTLLQMKTEVMEGTVAPEAEAAVDDTQIITLQVVNMEEQPINIGELQLVQVPV
PVTVPVATTSVEELQGAYENEVSKEGLAESEPMICHTLPLPEGFQVVKVGANGEVETLEQ
GELPPQEDSSWQKDPDYQPPAKKTKKTKKSKLRYTEEGKDVDVSVYDFEEEQQEGLLSEV
NAEKVVGNMKPPKPTKIKKKGVKKTFQCELCSYTCPRRSNLDRHMKSHTDERPHKCHLCG
RAFRTVTLLRNHLNTHTGTRPHKCPDCDMAFVTSGELVRHRRYKHTHEKPFKCSMCDYAS
VEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKRHMRTHSGEKPYECYICHARFTQSG
TMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYIEQGKKCRYCDAVFHERY
ALIQHQKSHKNEKRFKCDQCDYACRQERHMIMHKRTHTGEKPYACSHCDKTFRQKQLLDM
HFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENGGETKKSKRGRKR
KMRSKKEDSSDSEENAEPDLDDNEEEEEPAVEIEPEPEPQPQPPPPPQPVAPAPPPAKKR
RGRPPGRTNQPKQNQPTAIIQVEDQNTGAIENIIVEVKKEPDAEPAEGEEEEAQAATTDA
PNGDLTPEMILSMMDR
NT seq 2211 nt NT seq  +upstreamnt  +downstreamnt
atggaaggtgaggcggttgaagccattgtggaggagtctgaaactttcattaaaggaaaa
gaaagaaagacttaccagagacgccgggaagggggccaggaagaagatgcttgccacctg
ccccagaaccagacagatgggggtgaggtggtccaggatgtcaacagcagtgtacagatg
gtaatgatggaacagctggatcctacccttctccagatgaagactgaagtcatggagggt
acagtggctccggaagcagaggctgcagtggacgatacccagatcataaccttgcaggtt
gtaaatatggaggaacagcccattaacataggagagcttcagcttgtccaagtacctgtt
cctgtgacggtacctgttgctactacttcagtagaagaacttcagggggcttatgagaat
gaagtgtctaaagagggccttgcagaaagtgaaccgatgatatgtcacaccttacctttg
cctgaaggatttcaggtggtgaaagtgggggccaatggagaagtggagacactagagcag
ggcgagcttcctcctcaggaagactctagctggcaaaaagacccagactatcagccacca
gccaaaaaaacaaagaaaaccaaaaagagcaaacttcgttacacagaagagggcaaagac
gtggatgtgtctgtgtatgattttgaggaagaacagcaggaaggactgctgtctgaggtt
aatgcagagaaagtagttggtaatatgaagcctccgaagccaacaaaaattaaaaaaaaa
ggtgtaaagaaaacattccagtgtgagctttgcagttacacatgtccccggcgttcaaat
ttggatcgtcacatgaaaagccacactgatgagagaccacacaaatgccatctgtgtggc
agagcattcagaacagtgaccctcctgaggaatcatctgaacacacacacaggtactcgt
cctcacaagtgcccagactgcgatatggcctttgtgaccagtggagaattggtgcggcat
cgtcgttataaacacactcatgagaaaccatttaagtgttccatgtgtgattatgccagt
gtagaagtcagcaaattaaaacgacacattcgctctcatactggagagcgcccgttccag
tgcagtttgtgcagttatgccagcagggacacatacaagctgaaaaggcatatgagaacc
cattcaggggaaaaaccttatgaatgttatatttgtcacgctcggtttacccagagtggt
accatgaagatgcacattttacagaagcacacagaaaatgtggccaaatttcattgtccc
cattgtgacactgtcatagcccgaaaaagtgatttgggtgtccacttgcgaaagcagcat
tcctatattgaacagggcaaaaaatgtcgctactgtgatgctgtgtttcatgagcgatat
gctctcatccagcatcaaaaatcacacaaaaatgagaagcgcttcaagtgtgaccagtgt
gattatgcttgtagacaggagcggcacatgatcatgcacaagcgcactcacacgggggag
aagccttatgcctgcagccactgcgacaagaccttccgccagaaacagctcctcgacatg
catttcaagcgctatcatgatcccaactttgtccctgctgcctttgtctgttccaagtgt
gggaaaacattcacccgccggaacacaatggcaagacatgcagataactgtgctggtcca
gatggcgtagagggggaaaatggaggggagacaaagaagagcaaacgaggaagaaaaaga
aagatgcgatctaaaaaagaagactcctctgacagtgaagaaaatgctgagccggatctc
gatgacaatgaggaggaggaggagcctgctgtagaaattgaacctgagccagagcctcag
ccccagcctccgcctccacctcagcctgtggccccggcccccccacctgccaagaagaga
agggggcgacctcctggaagaaccaaccagcccaaacagaaccagccaacagccatcatt
caggtcgaagatcagaatacaggtgcaattgagaacattatagttgaagtcaaaaaggag
ccagatgccgagcctgcggagggggaagaagaggaggctcaggcagccaccacagacgcc
cccaacggagacctcacgcctgagatgatcctcagcatgatggaccggtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (35)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (24)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   UniGene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (3)   
   OC (1)   
   VEGA (1)   
Protein sequence (10)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (8)   
DNA sequence (36)   
   RefSeq(nuc) (8)   
   GenBank (14)   
   EMBL (14)   
Protein domain (8)   
   Pfam (8)   
All databases (93)   

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