KEGG   Mus musculus (house mouse): 20562
Entry
20562             CDS       T01002                                 
Symbol
Slit1, Slil1, mKIAA0813
Name
(RefSeq) slit guidance ligand 1
  KO
K06838  slit 1
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu04360  Axon guidance
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09150 Organismal Systems
  09158 Development and regeneration
   04360 Axon guidance
    20562 (Slit1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:mmu00536]
    20562 (Slit1)
Glycosaminoglycan binding proteins [BR:mmu00536]
 Heparan sulfate / Heparin
  Axon guidance molecules
   20562 (Slit1)
SSDB
Motif
Pfam: LRR_8 LRR_4 LRR_5 EGF Laminin_G_2 Laminin_G_1 LRRNT hEGF LRRCT LRR_9 LRR_1 DL-JAG_EGF-like EGF_2 EGF_3 JAG1-like_EGF2 FNIP Laminin_G_3
Other DBs
NCBI-GeneID: 20562
NCBI-ProteinID: NP_056563
MGI: 1315203
Ensembl: ENSMUSG00000025020
UniProt: Q80TR4
Position
19:complement(41586263..41735714)
AA seq 1531 aa
MALTPQRGSSSGLSRPELWLLLWAAAWRLGATACPALCTCTGTTVDCHGTGLQAIPKNIP
RNTERLELNGNNITRIHKNDFAGLKQLRVLQLMENQIGAVERGAFDDMKELERLRLNRNQ
LQVLPELLFQNNQALSRLDLSENFLQAVPRKAFRGATDLKNLQLDKNRISCIEEGAFRAL
RGLEVLTLNNNNITTIPVSSFNHMPKLRTFRLHSNHLFCDCHLAWLSQWLRQRPTIGLFT
QCSGPASLRGLNVAEVQKGEFSCSGQGEAAGAPACTLSSGSCPAMCSCSSGIVDCRGKGL
TAIPANLPETMTEIRLELNGIKSIPPGAFSPYRKLRRIDLSNNQIAEIAPDAFQGLRSLN
SLVLYGNKITDLPRGVFGGLYTLQLLLLNANKINCIRPDAFQDLQNLSLLSLYDNKIQSL
AKGTFTSLRAIQTLHLAQNPFICDCNLKWLADFLRTNPIETTGARCASPRRLANKRIGQI
KSKKFRCSAKEQYFIPGTEDYHLNSECTSDVACPHKCRCEASVVECSSLKLSKIPERIPQ
STTELRLNNNEISILEATGLFKKLSHLKKINLSNNKVSEIEDGTFEGAASVSELHLTANQ
LESIRSGMFRGLDGLRTLMLRNNRISCIHNDSFTGLRNVRLLSLYDNHITTISPGAFDTL
QALSTLNLLANPFNCNCHLSWLGDWLRKRKIVTGNPRCQNPDFLRQIPLQDVAFPDFRCE
EGQEEVGCLPRPQCPQECACLDTVVRCSNKHLQALPKGIPKNVTELYLDGNQFTLVPGQL
STFKYLQLVDLSNNKISSLSNSSFTNMSQLTTLILSYNALQCIPPLAFQGLRSLRLLSLH
GNDVSTLQEGIFADVTSLSHLAIGANPLYCDCRLRWLSSWVKTGYKEPGIARCAGPPEME
GKLLLTTPAKKFECQGPPSLAVQAKCDPCLSSPCQNQGTCHNDPLEVYRCTCPSGYKGRH
CEVSLDGCSSNPCGNGGTCHAQEGEDAGFTCSCPSGFEGPTCGVDTDDCVKHACVNGGVC
VDGVGNYTCQCPLQYTGRACEQLVDFCSPDMNPCQHEAQCVGTPDGPRCECMLGYTGDNC
SENQDDCKDHKCQNGAQCVDEVNSYACLCVEGYSGQLCEIPPAPRSSCEGTECQNGANCV
DQGSRPVCQCLPGFGGPECEKLLSVNFVDRDTYLQFTDLQNWPRANITLQVSTAEDNGIL
LYNGDNDHIAVELYQGHVRVSYDPGSYPSSAIYSAETINDGQFHTVELVTFDQMVNLSID
GGSPMTMDNFGKHYTLNSEAPLYVGGMPVDVNSAAFRLWQILNGTSFHGCIRNLYINNEL
QDFTKTQMKPGVVPGCEPCRKLYCLHGICQPNATPGPVCHCEAGWGGLHCDQPVDGPCHG
HKCVHGKCVPLDALAYSCQCQDGYSGALCNQVGAVAEPCGGLQCLHGHCQASATKGAHCV
CSPGFSGELCEQESECRGDPVRDFHRVQRGYAICQTTRPLSWVECRGACPGQGCCQGLRL
KRRKLTFECSDGTSFAEEVEKPTKCGCAQCA
NT seq 4596 nt   +upstreamnt  +downstreamnt
atggcgctaacgccccagcgcgggtcctcttcggggttgagccgaccggagctgtggctg
ctgctgtgggcagccgcgtggcgcctgggggccacggcgtgccccgccctctgcacctgc
accggcactacggtggactgccacggcacgggtttgcaggccatccccaagaacatccca
cggaacaccgagcgcctggaactcaacggcaacaacatcactcggatccacaagaatgac
tttgctggcctcaagcagcttcgagtgttgcagctgatggagaaccagatcggagctgtg
gaacgcggagcttttgatgacatgaaggagctagagcgcctacggctgaaccgcaaccag
ctacaagtgttgcctgaactactgttccagaacaaccaggctctatccagactggacctg
agtgagaattttctccaggctgtgcccaggaaggcttttcggggagccacagacctcaaa
aatctacagctggacaagaaccggatcagctgcatcgaggaaggggccttccgtgcccta
cggggactggaggttctgaccctgaacaacaacaacatcaccaccatccctgtgtccagt
ttcaaccatatgcccaagcttcggaccttccggctgcactccaaccacctgttctgtgac
tgccacctggcctggctctctcagtggctgagacagaggcccaccatcggactcttcacc
cagtgctctgggcccgccagccttcggggcctcaacgtggcagaggtgcaaaagggcgag
ttcagctgctcaggccagggggaggctgcgggagcacctgcctgcaccctctcgtccggt
tcctgcccagccatgtgcagctgtagcagcggcatcgtggactgccgtggcaagggcctc
actgccatccctgctaaccttccagagaccatgacagagatccgcctggagttgaacggt
atcaaatccatcccacccggagccttctctccctacagaaagctgcgcaggatagacctg
agcaacaaccagattgcagagattgcacccgacgccttccaaggcctgcgctccttgaat
tccctggtcctctatggcaacaagattacagacctgccccgaggtgtatttggaggcctg
tacacactccagctgctgcttctaaatgccaacaagatcaactgcatccggcctgatgcc
ttccaggacctgcagaacctctctctgctctccctgtatgacaacaagatccagagtctc
gccaagggcaccttcacctccctacgggccatccagacactgcatctggcccagaatcct
ttcatctgtgactgtaacctcaagtggctggcagacttcttacgtaccaaccccatcgag
acaactggggcccgatgtgccagcccccggcgcctcgccaacaagcgtattgggcagatc
aaaagcaagaagtttcggtgctcagccaaagagcagtacttcattccagggacagaggac
taccacctgaacagcgagtgtaccagcgacgtggcctgcccacacaagtgccgttgtgag
gccagtgtggtggagtgctccagcctgaaactctctaagatccctgagcgaatcccccag
tccacgactgagctacgactgaacaacaatgagatttctatcctagaggccactgggttg
tttaagaagctctcacatctgaagaaaataaacctgagcaataacaaggtgtccgagatc
gaagacgggacgtttgagggtgccgcctctgtcagtgagctgcacctgactgctaaccag
ctggagtccattagaagtggcatgttccggggtctagatggcttgcggaccctgatgctg
aggaacaaccgtatcagctgtatccacaacgacagcttcaccgggctgcgcaacgtgcgg
ctcctgtctctctatgacaaccacatcaccaccatctcccctggagcctttgacactctc
caggccctgtccacactaaacctcctggccaacccgttcaactgcaactgccatctgtca
tggctgggcgactggctccggaagaggaagattgtgacggggaaccctcgctgtcagaac
ccagacttcctgcggcagattcctctgcaggatgtggccttccctgacttcaggtgtgag
gaaggccaggaggaggtgggctgcctgccccgcccacagtgcccccaggagtgtgcctgc
ctggacacagtggtccgctgcagcaacaagcacctccaggctctgcccaagggcatcccc
aagaatgtcacagaactctatttggatgggaaccagttcacactcgttccgggacagctg
tctaccttcaagtatctgcagctcgtggacttgagcaacaacaagatcagttccttgagc
aattcttccttcaccaacatgagccagctgaccacgctgatcctcagctacaatgccctc
cagtgcatccctcctctggcctttcaaggacttcgttcgctgcgcctgctgtctttgcat
ggcaatgatgtctccaccctccaagagggcatctttgcagacgtgacgtctctgtctcac
ctggccattggtgccaaccccctgtactgcgactgccgcctccggtggctctccagttgg
gtgaagactggctacaaggaacctggcattgcccgctgtgctggacccccagagatggag
ggcaaactgttactcaccacacctgccaagaagtttgaatgccaaggtccccccagcctg
gcagttcaggccaagtgtgatccctgcttgtccagcccatgccagaaccagggcacctgc
cacaatgaccctcttgaggtatacaggtgtacctgccccagtggctacaagggccgacac
tgtgaggtgtctctggacggctgttccagcaacccatgtggaaatggggggacctgccat
gcccaggagggcgaggatgctggcttcacgtgctcctgtccctccggctttgaagggccg
acctgtggagtggacacagatgactgtgttaagcatgcctgtgtcaacgggggtgtctgt
gtagatggcgtggggaattacacatgtcagtgccccctgcagtacacaggaagggcctgt
gagcagctggtggacttctgctccccggatatgaacccgtgtcagcatgaggcccaatgt
gttggcaccccggatgggcccaggtgtgagtgcatgctaggttacacgggtgacaactgc
agcgaaaatcaggatgactgcaaggaccacaagtgtcagaacggggcccagtgtgtggat
gaagtcaacagctacgcctgcctctgtgttgagggctacagtggacagctctgtgagatc
ccacctgcccccaggagctcctgtgaggggacggagtgccagaatggagccaactgcgta
gaccagggaagccggcccgtatgccagtgcctaccaggctttggtggccctgaatgtgag
aaattgctcagtgtcaactttgtggaccgggacacttatctgcagttcactgacctgcag
aactggcctcgggccaacatcactcttcaggtctccacagcagaggacaatgggattctc
ctatataatggggacaatgaccacattgcagttgagctgtaccagggccatgtccgtgtt
agttatgacccaggcagctaccccagctctgctatctacagcgctgagacgatcaacgat
gggcagttccacaccgttgagctggtcaccttcgaccagatggtgaacctctccatcgat
ggcggcagccccatgaccatggacaactttggcaagcactacaccctcaacagcgaggcc
cccctctatgtgggagggatgcctgtggacgtgaactcagctgccttccgcctgtggcag
atcctcaatggtaccagcttccacggttgcatccggaacctgtacatcaacaatgaactg
caggacttcaccaagacacagatgaagccaggcgtggtgccaggctgtgagccgtgccgc
aaactctactgtctacatggcatttgccagcccaacgccaccccagggcctgtgtgccac
tgtgaggctggctgggggggcctgcactgtgaccagccagtggatggcccctgccatggc
cacaagtgtgtccatgggaaatgcgtgccgctcgacgctcttgcctacagctgccagtgc
caggatgggtactcgggggctctgtgcaaccaggtcggggctgtggcagagccctgtggg
ggcttgcagtgcctgcatggtcactgccaggcctctgccaccaaaggggcacactgtgtg
tgcagcccaggcttttcaggcgagctgtgtgagcaagagtccgagtgccggggggaccct
gtccgggactttcaccgggtccagaggggctatgccatctgccagaccacacgcccgctg
tcgtgggtggaatgccggggcgcgtgcccgggccagggctgctgccagggcctgcggctg
aagcggaggaagctcaccttcgagtgcagcgatgggacttcgtttgctgaggaggtggag
aagcccaccaagtgtggctgtgcccagtgcgcataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (37)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (31)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (7)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (5)   
DNA sequence (15)   
   RefSeq(nuc) (5)   
   GenBank (5)   
   EMBL (5)   
Protein domain (17)   
   Pfam (17)   
All databases (80)   

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