KEGG   Microbacterium sediminis: E3O41_03115
Entry
E3O41_03115       CDS       T06576                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K10843  DNA excision repair protein ERCC-3 [EC:5.6.2.4]
Organism
msed  Microbacterium sediminis
Pathway
msed03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:msed00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    E3O41_03115
  09124 Replication and repair
   03420 Nucleotide excision repair
    E3O41_03115
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:msed03021]
    E3O41_03115
   03400 DNA repair and recombination proteins [BR:msed03400]
    E3O41_03115
Enzymes [BR:msed01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     E3O41_03115
Transcription machinery [BR:msed03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     E3O41_03115
DNA repair and recombination proteins [BR:msed03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     E3O41_03115
SSDB
Motif
Pfam: ERCC3_RAD25_C Helicase_C_3 ResIII Helicase_C DEAD AAA_22
Other DBs
NCBI-ProteinID: QBR73513
UniProt: A0A4P7FDV6
Position
complement(643724..645367)
AA seq 547 aa
MSDGPLIVQSDRTVLLEVAHPDAESARHDLAVFAELERAPEHIHTYRITRLGLWNARAAG
HTADDMLRTLDQWSRFPVPPSVSTDIRETVNRYGRLTIERDDEGQLIFKSTDRAVLAEVS
RNKRIQPLLIAHPTPDIWVIDAWARGQIKQELLKIGWPAEDLAGYTPGTPHEIALDENGW
ALRPYQQQAVDTFRADGSGVVVLPCGAGKTLVGAGAMAATKTTTLILVTNTVSARQWRDE
LLKRTTLTPEEIGEYSGQVKEIKPVTIATYQILTSKRKGQYAHLDVLDALDWGLIVYDEV
HLLPAPVFKLTADLQARRRLGLTATLVREDGREGDVFSLIGPKRFDAPWKEIEAQGFIAP
AACYEVRVDLPADDRMEYAASADEDRYRLAATAPAKIDVVRDIIARHPGEQVLVIGQYLD
QLDELSDALGAPKITGATPVDEREVLFQAFREAKVPVLIVSKVANFSVDLPDASVAIQVS
GSFGSRQEEAQRLGRLLRPKSDGQTASFYTLIARDTVDQDFAQNRQRFLAEQGYSYTILD
VKDLVAA
NT seq 1644 nt   +upstreamnt  +downstreamnt
atgtctgatggccccctgatcgtccagagcgaccgcacggtgctcctcgaggtcgcgcac
cccgacgccgagtcggcgcgccatgacctcgcggtgttcgcggagctggagcgcgcgccg
gagcacatccacacctaccggatcacccggctcggcctgtggaacgcgcgcgccgccggt
cacaccgccgacgacatgctgcgcacgctcgaccagtggagccggttccccgtgccgccg
tcggtctccaccgacatccgggagacggtgaaccgctacggccggctcaccatcgagcgc
gacgacgagggccagctcatcttcaagtccaccgatcgcgccgtgctggccgaggtctcg
cgcaacaagcgcatccagccgctgctgatcgcgcaccccacccccgacatctgggtgatc
gacgcgtgggcgcgcggccagatcaagcaggagctgctcaagatcggctggccggccgag
gacctcgccggctacacgcccggcaccccgcacgagatcgcgctcgacgagaacggctgg
gcgctgcgcccctaccagcagcaggccgtcgacaccttccgcgcggacggatcgggcgtg
gtggtgctgccgtgcggcgcgggcaagacgctcgtgggtgcgggcgccatggcggcaacg
aagacgaccacgctgatcctggtgacgaacacggtctcggcgcggcagtggcgcgacgag
ctgctcaagcgcaccacgctcacgcccgaggagatcggcgagtactcggggcaggtcaag
gagatcaagcccgtcacgatcgcgacgtaccagatcctgacgtcgaagcggaagggccag
tacgcgcacctcgacgtgctcgacgcgctcgactggggcctcatcgtgtacgacgaggtg
cacctgctgcccgcccccgtgttcaagctcaccgccgacctgcaggcccgccgccggctc
ggactgacggcgacgctcgtgcgcgaggacggccgcgagggcgacgtgttcagcctcatc
ggccccaagcgcttcgacgcgccgtggaaggagatcgaggcccagggcttcatcgccccc
gccgcctgctacgaggtccgcgtggacctgccggccgatgaccgcatggagtacgcggcg
agcgccgacgaggaccgctaccgcctggcggcgacggcaccggccaagatcgacgtggtc
cgcgacatcatcgcccgccaccccggcgagcaggtgctcgtgatcggccagtacctcgac
cagctcgacgagctgagcgacgccctcggcgccccgaagatcaccggcgcgacgcccgtg
gacgagcgcgaggtgctgttccaggccttccgcgaggccaaggtcccggtgctgatcgtg
tcgaaggtcgccaacttctcggtcgacctgcccgacgcctcggtcgcgatccaggtctcc
ggctcgttcggctcccgccaggaggaggcccagcgcctgggccgcctgctgcgccccaag
agcgacggccagaccgccagcttctacacgctgatcgcccgcgacaccgtcgatcaggac
ttcgcgcagaaccgccagcgcttcctcgccgagcagggctacagctacacgatcctcgac
gtgaaggacctcgtcgccgcctag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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