KEGG   Thermothelomyces thermophilus: MYCTH_2298987
Entry
MYCTH_2298987     CDS       T02231                                 
Name
(RefSeq) hypothetical protein
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
mtm  Thermothelomyces thermophilus
Pathway
mtm03018  RNA degradation
mtm03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mtm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    MYCTH_2298987
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MYCTH_2298987
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mtm03019]
    MYCTH_2298987
   03041 Spliceosome [BR:mtm03041]
    MYCTH_2298987
Messenger RNA biogenesis [BR:mtm03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     MYCTH_2298987
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     MYCTH_2298987
Spliceosome [BR:mtm03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    MYCTH_2298987
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 11505903
NCBI-ProteinID: XP_003660545
JGI: 2298987
UniProt: G2Q4A5
Position
1:join(8931223..8931225,8931331..8931471,8931597..8931647,8931719..8931910)
AA seq 128 aa
MLPLGLLNAAQGHPMLVELKNGETLNGHLVQCDTWMNLTLREVVQTSPEGDKFMRLPEVY
VKGNNIKYLRVPDEIIDHVKEQQSQQGGYRGGRGGGGQGRGDHGGRGGDKGRGGRGRGGG
RGGRGRGS
NT seq 387 nt   +upstreamnt  +downstreamnt
atgttacccctcggcctcctcaacgcggcgcaaggccaccccatgctggtcgagctcaag
aatggcgagacgctcaacggccacctcgtacagtgcgatacgtggatgaacctcacgctg
cgcgaggtcgtgcagaccagtccggagggcgataaattcatgcggctgccagaggtttac
gtcaaggggaataatatcaagtacctgcgcgtcccggacgagatcatcgaccatgtgaag
gagcaacagagccagcagggcggctaccgcgggggccgcggcggcggcggacaagggagg
ggagaccacggcggtcggggtggtgataagggccgcggcgggagaggacgaggaggagga
agaggcggaaggggtaggggttcatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (16)   

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