KEGG   Meriones unguiculatus (Mongolian gerbil): 110549166
Entry
110549166         CDS       T05884                                 
Symbol
Upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
  KO
K14326  regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
Organism
mun  Meriones unguiculatus (Mongolian gerbil)
Pathway
mun03013  Nucleocytoplasmic transport
mun03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:mun00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    110549166 (Upf1)
   03015 mRNA surveillance pathway
    110549166 (Upf1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mun03019]
    110549166 (Upf1)
Enzymes [BR:mun01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     110549166 (Upf1)
    5.6.2.5  RNA 5'-3' helicase
     110549166 (Upf1)
Messenger RNA biogenesis [BR:mun03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     110549166 (Upf1)
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     110549166 (Upf1)
SSDB
Motif
Pfam: UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII SLFN-g3_helicase ATPase nSTAND3 Helicase_RecD DEAD AAA_16 UvrD-helicase SRP54 UvrD_C_2 AAA_22
Other DBs
NCBI-GeneID: 110549166
NCBI-ProteinID: XP_021493724
Position
4:complement(63054139..63076309)
AA seq 1130 aa
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGAGGPSGA
GAGGAVGQLDAQVGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSY
CGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYN
CGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKI
PSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNI
FGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAFFTLPKTDSGNEDLVIIWLRDM
RLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNLTQRPDYGDEIAIELRSSVGAPVEVTHN
FQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVVIKCQLPKRFTAQGL
PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVD
QLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELS
SADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMV
PVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPAL
SAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRT
EAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDA
FQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHL
LSYYKEQKALVEGPLNNLRESLMQFSKPRKLVNTVNPGARFMTTAMYDAREAIIPGSVYD
RSSQGRPSNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGR
GTPKSKTGRGGRQKNRFGLPGPSQTTLPSSQASQDVASQPFSQGALTQGYVSMSQPSQMS
QPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq 3393 nt   +upstreamnt  +downstreamnt
atgagcgtggaggcgtacggccccagctcgcagacgctcaccttcttagacactgaggag
gccgagctgcttggcgccgacacccaaggctcggagttcgagttcaccgacttcaccctt
cccagtcagacgcagacgccccccggcggccccggcggcgcgggaggcccaagcggagcg
ggcgcaggcggcgcggtcggccagctcgacgcacaagttggaccagagggcatcttgcaa
aatggggctgtggatgacagtgtggccaagaccagccagctgctggcagagctgaacttt
gaggaagatgaagaggacacatactacaccaaggacctcccagtccatgcctgcagttac
tgcggaatccatgatcctgcctgcgtagtttactgcaataccagcaagaagtggttctgc
aacggtcgaggaaatacttctggcagccacattgtaaatcacctcgtgagggccaaatgc
aaggaagtgacactgcacaaggacgggcccctgggtgagacagtgctggagtgctacaac
tgcggctgccgcaacgtcttcctgctgggcttcatccctgcaaaggctgactccgtggtg
gtgctgctgtgcaggcaaccttgtgccagccagagcagcctgaaggacatcaactgggac
agctcacagtggcagcccctgatccaggaccgctgcttcctgtcatggctggtcaagatt
ccctcagagcaggagcagctgcgggcacggcagatcactgcacagcagatcaacaagctg
gaggagctgtggaaggagaatccttcagccaccctggaggacctggagaagccaggtgtg
gatgaggagccacagcatgtgctcctgcggtatgaggatgcctaccagtaccagaacatc
ttcgggccgctggtcaagctagaggctgactatgacaagaagctcaaggagtcacagact
caagataacatcacggtcaggtgggacctgggccttaacaagaagagaatcgccttcttc
actttgcccaagactgactctggtaatgaggatttagtcataatttggttaagagatatg
cggctcatgcagggtgatgagatctgtctgcggtacaaaggggacctggcgcccctatgg
aaggggattggccatgtcatcaaggtccccgataacttaactcagcggccagattacggt
gatgagattgctattgagctccgcagcagcgtgggcgcccccgtggaagtgacccacaac
ttccaggtggattttgtgtggaagtcgacctcttttgacaggatgcagagtgcgctgaag
accttcgctgtggacgagacctccgtgtcagggtatatctaccacaagctgctgggccac
gaggtggaggacgtggtcatcaagtgccagctgccgaagcgcttcacggctcaggggctc
cctgacctcaaccactctcaggtgtacgctgtgaagaccgtgctgcagagaccactcagc
ctcatccagggccctccaggcacaggcaagactgtcacgtcagccacaattgtctaccac
ctagctcggcagggcaatgggcctgtgcttgtttgtgccccaagtaacatcgccgtagac
cagctcacagagaagatacaccagacagggctgaaggttgtacgcctctgcgccaagagc
cgcgaggccattgactccccggtgtccttcctggccttgcacaatcagatcaggaacatg
gacagcatgcctgagctgcagaaactacagcagctgaaggacgagacaggcgagctgtcg
tctgcagatgagaagcggtaccgggcactcaagcgcacggctgagagagagctgctgatg
aatgcagatgtcatctgctgcacgtgtgtgggtgctggtgatccgaggctggccaagatg
cagttccgttccatcctcattgatgagagcacccaggccactgagcccgagtgcatggtg
cctgtggtcctcggggccaagcagctgatccttgtgggcgaccattgccagctgggtcca
gtagtgatgtgcaagaaggcagccaaggccggactgtcacagtcactcttcgagcgcttg
gtggtgctgggcatccggcccatccgcctgcaggtgcagtaccgcatgcaccccgcactc
agcgccttcccgtccaacatcttctacgagggctcattgcagaacggcgtcactgcagct
gatcgtgtcaagaagggctttgacttccagtggccacagcctgacaagcccatgttcttc
tacgtgacgcagggccaggaggagattgccagctccgggacgtcctacctcaacaggacg
gaggcagccaatgtggagaagataactacgaagctgctgaaggcgggtgcgaagcctgac
cagatcggcatcatcacaccctacgagggccagcgctcctacctggtgcagtacatgcag
ttcagcggctccctgcacaccaagctctaccaggaagtggagatcgccagtgtggatgcc
ttccagggccgggagaaggacttcatcatcctctcctgcgtgcgtgccaacgagcaccag
ggtattgggtttctaaacgaccccaggcgtctcaacgtggctctcaccagagcgaggtac
ggtgtgatcattgtgggtaacccaaaggcgctatcaaagcagcctctgtggaaccacctg
ctgagctactacaaggagcagaaggcgctggtggaagggccgctcaacaacctgcgggag
agcctcatgcagttcagcaagcctcggaagctcgttaacaccgtcaacccgggggcccgc
ttcatgacaacagccatgtatgatgcccgggaagccatcatccccggatcagtgtatgac
cggagcagccagggccggccttcgaacatgtactttcagacccatgaccagatcggcatg
atcagtgcaggccccagccacgtggccgccatgaacatccctattcccttcaacttggtt
atgcctcccatgccaccacctgggtactttggacaagccaatgggccggctgcgggccgg
ggcaccccaaaaagcaagactggccgtgggggccgccagaagaaccgcttcgggcttccc
gggcccagccagaccaccctgcctagcagccaggccagccaggatgtggcctcccagccc
ttttcgcagggtgccctcacacagggctacgtgtccatgagccagccctcccagatgagc
cagcccggcctctcccagccagaattgtcccaggacagctacctcggggacgagtttaag
tcacagatcgacgtggcgctctcccaagactccacctaccagggagagcgggcgtaccag
cacggcggggtcaccgggctgtcccagtactag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (17)   
   Pfam (17)   
All databases (36)   

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