KEGG   Musa acuminata (wild Malaysian banana): 103976574
Entry
103976574         CDS       T03447                                 
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4
  KO
K12818  ATP-dependent RNA helicase DHX8/PRP22 [EC:5.6.2.6]
Organism
mus  Musa acuminata (wild Malaysian banana)
Pathway
mus03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mus00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103976574
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:mus03041]
    103976574
Enzymes [BR:mus01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     103976574
Spliceosome [BR:mus03041]
 Complex C
  Other components
   Step II factors
    103976574
SSDB
Motif
Pfam: OB_NTP_bind Helicase_C HA2_N HA2_C AAA_22 DEAD AAA_19 ABC_tran AAA_30 DUF4933 AAA_16 nSTAND3 cobW SLFN-g3_helicase Helicase_RecD AAA_23 AAA_29 ATPase_2 NACHT AAA_33 FtsK_SpoIIIE Sigma54_activat
Other DBs
NCBI-GeneID: 103976574
NCBI-ProteinID: XP_009390104
UniProt: A0A804I5U6
Position
2:20618948..20639513
AA seq 704 aa
MAVLPILQFEDKIAETVAENPVVVIIGETGSGKSTQLSQILHRRGYTRSGAIAVTQPRRV
AAVTVARRVAFELGSRLGEEVGYAIRFEDRTSDKTCIKYLTDGCLLRESLSNPELNQYSV
IILDEAHERSLNTDILLGLMKRLINRRSSNLKVLITSATLDGVKVSRFFSGCPVLNVPGI
LFPVEKLYSTERPTNYVECCLKTALDVHVREPPGDVLIFMTGQDDIDKMVFKLEEKIQNL
EEGSCMDAIVFPLHGSLPPELQIRVFSPAPPNCRRFIVATNIAETSLTVDGIVYVIDSGF
VKQRQYNPSTGMYSLDIVQISRVQADQRAGRAGRTRPGKCYRLYPRTVYDEEFLDATIPE
IQRSSLAGSVLYLKSLSLSDIDILKFDFLDPPSRESLEDALRQLYLIDAIDENGQITEIG
KAMAELPLEPSLARTLIEANELGCLSQALTVTSMLSAEVAIRPAHSKNKEKKRKQSFSKS
KLPDGSGWGDHIQLLQVYESWDRADYDPNWCTDNDLQVRSMMFSKDVRKQLSQIVQKMGK
GSLDVESGMRQKKSDKDYKKLRRALCRGYGNQLAERMLLHNGYHTLGYRSQLVQVHPSSV
LEADEDGQLPDYVVYHELINTSRPFMRNVCAVEISWVQPISKKLEKMNIDKLSGGSGASE
NNETIENKTINSPLQAVDASGPPGSMDSKIQAARERYLARKANR
NT seq 2115 nt   +upstreamnt  +downstreamnt
atggcggtcctccccatcctccaattcgaggacaagatagcggagaccgtggcggagaac
ccggtggttgtgatcatcggcgagacgggctccgggaagagcacgcagctctcccagatc
ttgcaccgtcgggggtacacccgttccggtgcgatcgccgtcacccagcctcgccgggtc
gccgcggtcaccgtcgcgaggagggttgcatttgaactaggttctcgacttggtgaagaa
gtgggctatgcaattcgtttcgaagatcggacttctgataaaacctgcattaagtatcta
actgatggttgtcttcttcgagaaagcctatctaatccagaacttaaccagtactcagtt
attatcttggatgaagctcatgaacgcagtttgaacactgacatattgctgggcttaatg
aaacgcttaatcaatagacgctcctcaaatttgaaagttctcatcacttctgcaaccctt
gatggtgtcaaagtatctagatttttctccggatgccctgtattaaacgtcccagggata
ttattccctgtggaaaaattatacagcactgaacgacccacaaattatgtcgaatgctgt
ctgaagactgctctagatgtacatgtccgtgaaccgcctggagatgtcttgatttttatg
acaggacaggatgacattgataaaatggtgtttaagctggaggagaagattcaaaacctc
gaggaaggttcttgcatggatgctatagtctttccacttcatggttctttaccacctgaa
ttgcagattcgtgtattcagtccagcaccaccaaactgcagacggtttattgttgctacc
aacatagctgaaacttctctcactgttgatggtatcgtgtatgtcattgattctggtttt
gtgaagcagcgccaatataacccctcgaccggaatgtattctcttgatatcgtgcagata
agtagagttcaagctgatcaacgagctgggcgagccggaaggactcgtcctggcaagtgt
taccggttatatcctagaactgtttatgatgaggagtttcttgatgcaacaataccggaa
attcagcgatcatctcttgctggaagtgttctttacctgaagtcgttaagtctttctgat
attgatatcttgaagtttgattttctggatccaccatcacgtgaatcactagaagatgct
ttaaggcaattatacctcattgatgcaattgatgaaaatggacagataactgagattgga
aaagctatggctgagcttccattggaaccctcgcttgcaaggactttaattgaggcaaat
gagttgggatgtttgtctcaggctttgacagtcacatctatgctatcagcagaagttgca
attcgtcctgctcacagtaaaaacaaagagaagaagagaaaacaatcattttccaaatcc
aaactaccagatggttctgggtggggtgaccatatacaactgcttcaagtatatgaaagt
tgggaccgagccgactatgatccaaattggtgcactgacaatgacttgcaggtccgcagc
atgatgtttagcaaggatgtgaggaagcaactatctcagatagtacagaagatgggaaaa
gggtcattggacgtagaatcaggcatgcggcaaaaaaaaagtgataaagactacaaaaag
ctcaggagagctttatgcagaggctacggaaatcagttggccgaacggatgctgcttcac
aatggctatcatacacttggttacaggtcgcaacttgtgcaggttcatccatcctcggtg
ctagaagctgatgaagatggacagttgccagattatgttgtttaccatgaactcataaat
acctctcggccttttatgagaaacgtatgtgcagttgaaatttcatgggtccaaccaatc
tcaaagaaactggagaagatgaacattgacaagctgagtggtggctctggtgcttcagaa
aataatgagaccatcgagaacaaaacgataaattcacctttgcaagcggtagatgccagt
ggtccacctggttccatggatagtaaaattcaggcagcccgtgaacgatatcttgctaga
aaggcaaatagatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (22)   
   Pfam (22)   
All databases (48)   

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