KEGG   Notothenia coriiceps (black rockcod): 104948752
Entry
104948752         CDS       T04920                                 
Symbol
traf6
Name
(RefSeq) TNF receptor-associated factor 6
  KO
K03175  TNF receptor-associated factor 6 [EC:2.3.2.27]
Organism
ncc  Notothenia coriiceps (black rockcod)
Pathway
ncc04010  MAPK signaling pathway
ncc04120  Ubiquitin mediated proteolysis
ncc04140  Autophagy - animal
ncc04144  Endocytosis
ncc04620  Toll-like receptor signaling pathway
ncc04621  NOD-like receptor signaling pathway
ncc04622  RIG-I-like receptor signaling pathway
ncc05132  Salmonella infection
ncc05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:ncc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    104948752 (traf6)
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    104948752 (traf6)
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    104948752 (traf6)
   04140 Autophagy - animal
    104948752 (traf6)
 09150 Organismal Systems
  09151 Immune system
   04620 Toll-like receptor signaling pathway
    104948752 (traf6)
   04621 NOD-like receptor signaling pathway
    104948752 (traf6)
   04622 RIG-I-like receptor signaling pathway
    104948752 (traf6)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    104948752 (traf6)
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    104948752 (traf6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ncc04131]
    104948752 (traf6)
   04121 Ubiquitin system [BR:ncc04121]
    104948752 (traf6)
Enzymes [BR:ncc01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     104948752 (traf6)
Membrane trafficking [BR:ncc04131]
 Endocytosis
  Clathrin-mediated endocytosis
   Ubiquitin E3 ligases
    104948752 (traf6)
Ubiquitin system [BR:ncc04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRAF proteins
    104948752 (traf6)
SSDB
Motif
Pfam: TRAF-mep_MATH zf-TRAF zf-C3HC4_2 zf-C3HC4 zf-RING_2 zf-RING_UBOX zf-C3HC4_3 zf-C3HC4_4 zf-RING_5 TRAF6_Z2 TRAF3_RING U-box Sina_ZnF Prok-RING_4 zf-RING_11 zf_UBZ zf-TRAF_2 DM
Other DBs
NCBI-GeneID: 104948752
NCBI-ProteinID: XP_010773281
UniProt: A0A6I9N5U4
Position
Unknown
AA seq 571 aa
MACFGSNKGSLEEDSYDGPVGGELSGCALAMLEKERESLPSPSESPGSSSISASLQAAAP
IQGYDVEFDPPLESKYECPICLMALRNAIQTPCGHRFCKNCIEKSIRDAGQRCPVDNARL
SEDQLFPDNFAKREILSLMVRCQNSGCANRMELRHLEKHMAKCEFATVPCPQCQQSVRQS
QIEEHTTVECTRRPVSCPDCLVCFVHEERELHEQQCPFASVKCQYCEMDLLRDQIESHCD
ADCPKAPIACNFSTFGCKERMQRHNLAQHMQEFTQMHMRYMAEFLRGLSLNGTTPKSLWT
LGPSVSLEDQGAGATAAASACSGPRGAASCSSNCGPSPPTEEVQKLRDLDGRLVRQDHRL
RELVIFKETQSGHIAELRRRVLSLEETVKELESQQCHGIFIWRLKGFSSLLRNQEASLPV
VEHSPGFYTGRPGYKLCLRLHLQAPNAPRCSNYISLFVHTMQGAFDGQLTWPFQGTIRLT
ILDQGPEGQHHMEVMETKPDLQAFQKPTIQRNPKGFGYVTFLHLHQLSQRAYVKDDTLLI
RCEVTPRFDNVIHREGPAVQPRGPEATISRD
NT seq 1716 nt   +upstreamnt  +downstreamnt
atggcctgctttggaagcaataagggaagtttggaggaggacagctatgatggacctgtt
ggtggagagctgtccggctgtgcgttggcaatgctggaaaaggagcgagaatccctcccc
agcccatcagagagccctggcagcagcagcatctctgcaagtcttcaggccgctgccccc
atccagggctatgatgtggagttcgacccacccttagagagtaaatacgagtgccctatc
tgcctcatggctttaaggaatgccattcaaacaccctgtggtcaccgtttctgcaagaac
tgcattgagaagtctattcgtgatgcaggacagaggtgccctgtggacaatgcaagactg
tcagaagaccagttgttcccggataactttgccaagcgggagattctgtcgctaatggtt
cgctgtcaaaactctggctgtgctaacagaatggagctccgacatttggagaaacatatg
gcgaagtgtgagtttgccacagtgccctgcccgcagtgccagcagtctgtgagacagagc
cagatcgaggagcacacaactgtggagtgcacgaggaggcctgtgtcatgcccagattgt
ctggtgtgctttgttcacgaggagagagagcttcatgagcagcagtgtccctttgccagt
gtgaaatgccagtactgtgagatggatctcctcagagaccagattgaatctcattgtgat
gcagattgcccaaaagcacccatcgcctgtaactttagcacctttggatgtaaggaaagg
atgcagcgacacaacctggctcagcacatgcaggagttcactcagatgcacatgcgctac
atggccgagttcctgcgtggcctaagcctcaatggcaccacacccaaatccctgtggacg
ctaggaccatctgtttccttagaggatcagggagcaggagccacagcagcagcctcagcc
tgcagcgggccccgaggagccgcaagctgcagcagcaactgtggccccagtccgcctact
gaggaggtccagaagctcagggacttggatggacgattggtaaggcaggatcaccggctg
cgggagctcgttatctttaaagaaacacagtccggccacattgcagagctcaggcgccga
gtgttgtcgctggaggagacggtgaaggagctggaatcacagcagtgtcacggtatcttc
atctggcgccttaaaggtttctcctccctcctgcggaaccaagaagcaagcctgcctgtg
gtggagcacagccccggcttctacaccggtcgccccggctacaaattgtgcctgcgccta
cacctgcaggcccccaacgccccgcgctgctccaactacatctccctcttcgtccacacc
atgcaaggagcttttgacgggcagctgacgtggccgttccagggaaccatccgcctcacc
atcctggaccagggcccagagggtcagcaccacatggaggtgatggagactaaacctgac
ctgcaagccttccagaagccaaccatccagcgcaaccccaaaggattcggctacgtcacc
ttcctgcacctgcatcagctgagtcagagagcctatgttaaagatgacactctgctcatc
cgctgtgaggtcacaccgcgttttgacaatgtgattcaccgcgagggcccagcagtgcag
cctagaggaccagaggccacaatttcgagagactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (9)   
   KEGG PATHWAY (9)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (37)   
   KEGG ORTHOLOGY (1)   
   RefGene (33)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (5)   
   UniProt (1)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (18)   
   Pfam (18)   
All databases (79)   

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