KEGG   Nothobranchius furzeri (turquoise killifish): 107379461
Entry
107379461         CDS       T05163                                 
Symbol
chd4
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 4 isoform X1
  KO
K11643  chromodomain-helicase-DNA-binding protein 4 [EC:5.6.2.-]
Organism
nfu  Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03082  ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:nfu00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    107379461 (chd4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:nfu03036]
    107379461 (chd4)
Chromosome and associated proteins [BR:nfu03036]
 Eukaryotic type
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    107379461 (chd4)
  Chromatin remodeling factors
   NuRD complex
    107379461 (chd4)
SSDB
Motif
Pfam: SNF2-rel_dom CHDCT2 CHDII_SANT-like Helicase_C CHDNT PHD DUF1087 Chromo HDA2-3 ResIII DEAD PHD_2 AAA_22 zf-PHD-like
Other DBs
NCBI-GeneID: 107379461
NCBI-ProteinID: XP_015805709
UniProt: A0A8C6K566
Position
sgr05:complement(61280868..61324876)
AA seq 1964 aa
MSCSEDEREDFGADDEHSLLHDEDEPEDAVSDAEEAPKSKKKKKAKKSNRESRSSKRQRP
IREELPVSSPEHLIGLEAAERDVNEGGMRSESEGSDYAPGRKKKKRSSSAKDKKKGGGGG
EKGGSKSKRKDPEPDDDDDDDDDCQPKSSTQLLEAWGMKDIDHVFSQEDYSSLTNYKAFS
QFVRPLIAAKNPKIPVSKMMTLMMAKWREFSTNNPLKGCATANAALAAANVAAAVENMVV
AGTDGGAEIPPAAPAPVPAAAAAPAPTPAAPPAAPAPPLRKAKTKEGKGPNARKRSKPAS
KPPAKQKPKKVAPLKIKLGGLNSKRKRSSSDEDEPDVDSDFDDGSFSVSDGSNRSSRSKK
KSKSAKKKKKVETEDGDGYETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPE
GKWSCPHCEKEGIQWEARDDLSEAEGEDDDDRRDEGLEEEDDHHIEFCRVCKDGGELLCC
DTCPSSYHIHCLNPPLPEIPNGEWICPRCKCPPMKGKVQKVLLWRWGDPPAPMPVPRPPD
LPADAPDPPPLVGRREREFFVKWCNMSYWHCSWVQELQLELNCQVMFRNYQRKTDMDDPP
PVDFGGEGDDDKSTKRKNKDPLFVHMEEEFCRFGVKLEWLMIHRILNHSVDKKNNVHYLI
KWRDLAYDQSTWESEDMDIPEYDTYKQIYWNHRELMTGEEGKPGKKLKKTVKVKKAERPP
ANPVVDPTIKFDRQPDYLDSTGGTLHPYQLEGLNWLRFSWAQATDTILADEMGLGKTVQT
AVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAVIRENEF
SCEGNATRGGKKASKMKKDSTIKFHVLLTSYELITIDQAVLGSIEWACLVVDEAHRLKNN
QSKFFRQLNNYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADIAKED
QIKKLHDMLGPHMLRRLKADVFKHMPSKTELIVRVELSPMQKKYYKFILTRNFEALNTRG
GGNQVSLLNVVMDLKKCCNHPYLFPAAATEAPKLPNGMYEGAALTKASGKLMLLQKMMKK
LKEGGHRVLVFSQMTKMLDLLEDFLENEGYKYERIDGGVTGNMRQEAIDRFNAPGAQQFA
FLLSTRAGGLGINLASADTVIIFDSDWNPHNDIQAFSRAHRIGQNRKVMIYRFVTKASVE
ERITQVAKKKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGTEELFKDEVGDGDNKEDDS
SVIHYDDPAIERLLDRNQDATEDTELQSMNEYLSSFKVAQYVVKDEDDEEEELEREVIKQ
EESVDPDYWEKLLRHHYEQQQEDLARNLGKGKRTRKPVNYNDGSQEDRGIRQDWQEDQSD
NQSDYSVASEEGDEDFDERAEANARRPNRKGLRNDRDKPLPPLLARVGGNIEVLGFNARQ
RKAFLNAVMRYGMPPQDAFTNQWLVRDLRGKPEKEFKAYVSLFMRHLCEPGADGAETFAD
GVPREGLSRQHVLTRIGVMSLIRKKVQEFEHVNGQWSMPWMAELEENKRAAALAAGEDPK
TPSTGTPADTQPNTPIPEDFSKSDERDDMKKEGEDSKAKKDDPEIIEIPDESEKSPVVNK
KDAAVEKEDKEDGEEGKEKEAEDLSREKEEKSSAAMVASVNNKGGGSDGRMDSEDKCKAE
DGKYEKMDTSPPEERKDPKEEKDGVKTEEPGKLQNGENAKDGGAAAVNISEEKKKATKQR
FMFNIADGGFTELHSLWQNEERAATVTKKTYEIWHRRHDYWLLAGIIQHGYARWQDVQND
VRFAIINEPFKGEMSRGNFLEIKNKFLARRFKLLEQALVIEEQLRRAAYLNMTEDPAHPS
MALNTRFSEVECLAESHQHLSKESMSGNKPANAVLHKVLKQLEELLSDMKADVTRLPATI
ARIPPVAVRLQMSERNILSRLASRGPEVGIQNPSQTSQQMQVPR
NT seq 5895 nt   +upstreamnt  +downstreamnt
atgtcttgcagcgaggatgagagggaggactttggagccgatgacgagcactcacttctt
cacgacgaggacgagccggaggatgctgtctctgacgcagaagaggcacccaagtcaaag
aagaagaagaaagccaaaaagagcaaccgggagagcaggagcagcaagaggcagagaccc
atccgggaggaattgccagtcagctccccagagcacctgattggattggaggcagcagag
agggatgtaaatgagggaggtatgcggtcagagagtgaaggaagtgattatgcacctggt
agaaaaaagaaaaaacgctccagctctgccaaagacaagaagaaaggaggagggggagga
gagaaaggaggctcaaagagcaaacgtaaagatccagaaccggatgatgacgacgatgat
gacgacgattgccagcctaaaagctccacgcagctgctggaggcctggggcatgaaagac
attgaccacgtcttttctcaggaagactacagctccctcacgaactacaaggcattcagt
cagtttgtcaggcctttaattgctgcaaagaaccccaaaattcctgtgtccaaaatgatg
actttaatgatggctaaatggagggaattcagcacaaataacccactcaagggttgcgcc
actgctaatgcagccttggcagctgccaatgtggctgcagctgtggagaacatggtggtt
gcagggaccgatggaggtgcagagattcctcctgctgctcctgctccagttcctgccgcc
gctgcagctcctgctccaacaccagctgcacctcctgctgctccagcacctccgctccgc
aaagccaagaccaaagagggaaaaggcccaaatgctcgcaagaggtcaaagcctgcgtct
aaacctcctgctaaacagaaacccaagaaggtggctccactcaaaatcaaactgggaggc
ctcaacagcaagaggaagcgctcatctagcgatgaagatgaacctgatgtcgacagtgac
ttcgatgacgggagtttctctgtttctgatggctccaaccgcagcagccgttctaagaag
aaatctaagagtgccaagaaaaagaagaaagtggaaacagaagatggtgacgggtatgag
acggaccatcaggactactgtgaggtgtgccagcagggcggggagatcattttgtgtgac
acctgccctcgagcctatcacatggtctgtctggacccagacatggagaaagcacctgag
ggcaagtggagttgcccacactgtgagaaggaggggatccagtgggaggccagggatgat
ctgtccgaggccgaaggggaggacgatgacgacaggagagatgaagggttggaggaggaa
gacgaccatcacatcgagttttgccgcgtgtgcaaggacggtggagagttgctgtgttgt
gacacctgcccctcctcctaccacatccactgccttaatcctcctctccctgagatcccc
aacggggagtggatctgcccccgctgcaagtgtccaccgatgaagggaaaagtgcagaag
gttttattgtggcgctggggggatccaccagcccccatgcctgtccctcggcctcctgac
cttcctgctgatgctcctgatcctcctcctttggtgggccgcagggagagggagttcttt
gtcaaatggtgcaatatgtcctactggcactgctcctgggtgcaggagctacagttggag
ctgaactgccaggtgatgtttcgtaactaccagaggaagaccgacatggacgatcctcct
cctgtagactttggaggtgagggcgatgatgacaaaagcaccaagaggaagaacaaagat
cccctctttgtccacatggaggaggagttttgccggtttggagtcaagctggagtggctg
atgatccaccgcatccttaaccacagtgttgataagaagaacaatgtgcattatctaata
aagtggagagatctggcatatgaccagtccacctgggagagtgaagacatggacattcct
gagtatgacacatacaagcagatctactggaatcacagagagctgatgacgggggaggag
gggaaacctggtaagaagcttaagaagaccgtcaaagtgaaaaaggcagagcggccacct
gctaacccagttgtagatcccaccataaagtttgatcggcagccagactacctggacagt
acaggaggcacgctgcatccctaccagctggaggggctgaactggctgaggttttcttgg
gctcaggccacggacacaatcctggctgatgagatgggtttgggcaagactgtacagaca
gctgtcttcctgtactcgttgtacaaggagggccactccaaaggccccttcctggtcagt
gctcctctgtccaccatcatcaactgggagagagagtttgagatgtgggctcctgacatg
tatgtggtcacttatgttggtgacaaagacagcagagcggttatccgagaaaatgagttc
tcctgcgagggcaacgccaccagaggagggaaaaaggcctccaagatgaagaaagactca
acaattaagtttcacgttctgctgacatcctatgagttgattaccattgaccaggctgtg
ctgggctccattgaatgggcctgtttggttgttgatgaggcgcacagactcaagaacaac
caatccaagttctttaggcagttgaacaactattcactgcaacacaaacttctgctcact
ggaacccctcttcagaacaacctggaggagctttttcacctgctgaacttcttgactcca
gagagattcaataaccttgaagggtttctggaggagtttgcagacatcgccaaagaggac
caaatcaagaaactccatgacatgttgggaccccacatgctcaggaggctgaaggccgat
gtgttcaaacacatgccttctaaaacagaactcatcgttcgagtggagctgagccccatg
cagaagaaatactacaagtttattctaacacgtaacttcgaggccctgaacactcgagga
ggcggaaaccaagtgtctttgctaaacgttgtcatggaccttaaaaaatgctgcaatcac
ccctacctcttccctgctgctgccacagaggcaccaaaactcccaaatggcatgtatgaa
ggtgccgccctgaccaaagcttcagggaagctgatgctgctccagaagatgatgaagaag
ctgaaggaaggaggccacagggttctggttttctcccaaatgaccaaaatgcttgaccta
ctggaggacttcctggagaacgagggatacaaatatgagaggattgatggaggagtcact
ggcaacatgagacaggaggctattgatcgctttaatgctcctggtgctcagcagtttgcg
ttcctcctctccactcgggccggtggtttgggcattaatctggcctctgctgacacagtt
atcatcttcgactctgactggaaccctcacaatgacatccaggcgttcagcagagctcat
cgtatcggccagaacaggaaggtgatgatctatcgctttgtcactaaagcttctgttgaa
gagaggatcacacaggtggcaaagaagaagatgatgctcactcaccttgtggtgagaccc
ggcctcggctctaagaccggctccatgtccaagcaggaactcgatgacatccttaagttt
ggaacagaagagctgttcaaggatgaggtcggcgatggggacaacaaagaggatgacagc
agcgtgatccactatgacgatccggcgattgagcgtttgctggacagaaaccaggacgcc
acagaggacactgagctccagagcatgaatgagtacctcagttcctttaaggtggcccag
tatgtggtcaaagatgaagacgacgaggaggaggagttagaaagggaggtgatcaagcag
gaggagagcgttgatcctgactactgggagaagctgcttcggcatcactatgagcagcag
caagaggaccttgcacgcaatttaggcaaaggcaaaagaactagaaaaccggtcaactac
aatgacggttcccaggaggatcgaggtatacgacaggactggcaggaggatcagtctgat
aaccagtctgattactcggtggcttcagaggagggagacgaggactttgatgaacgtgct
gaagcgaacgcgcgcaggcctaacaggaaagggctgaggaacgaccgggacaaacctctt
cctccgctgctcgccagggttggaggtaacattgaggttttgggcttcaacgctcgtcag
aggaaggctttcctcaacgcggttatgcgttatgggatgccgccacaggatgctttcacc
aaccagtggctggtcagggatctgcgagggaagcctgagaaggagttcaaagcctatgtg
tctctgttcatgcgccacctctgtgagccgggagccgacggagctgagacctttgcagat
ggcgtcccgcgtgagggtctgtccaggcaacatgtgcttactcgcatcggtgtgatgtca
ctgataaggaagaaggtgcaggagtttgagcacgtgaacggtcagtggtcgatgccctgg
atggcggagctggaggagaacaaacgggcggcagctttagctgcaggcgaagacccgaaa
actccttcaactgggactcctgcagacacgcagcccaacacccccatcccagaagatttt
tctaaatcagatgagcgagatgacatgaagaaagagggagaggacagcaaagctaagaaa
gatgatccagagattattgaaatcccagatgagtctgaaaagtcccccgttgttaacaag
aaagatgctgctgtggagaaggaagacaaggaggatggagaggaaggaaaggagaaggaa
gctgaagacctgagcagagagaaagaagagaagtcttcagcagcgatggttgcttctgta
aacaataaggggggaggttcagatggaaggatggattcagaggacaagtgtaaagctgag
gacggcaaatacgagaagatggacacctcaccaccagaggagagaaaagatccaaaggag
gagaaggacggcgtgaaaacagaggagcccggaaagctgcagaatggagagaatgccaaa
gatggaggagcagctgcggttaacatcagcgaagagaagaagaaagccaccaagcagaga
ttcatgttcaacatcgcagacgggggcttcacagagctccactccctgtggcagaacgaa
gagagggccgccactgtcacgaagaagacctatgagatctggcaccgtcgtcatgactac
tggctgttggctggaatcatacaacacgggtacgctcgatggcaggatgtgcagaacgat
gtgaggtttgctattatcaacgagcccttcaaaggagagatgagcagaggaaacttcctg
gaaatcaagaacaagtttctggctcgcaggttcaagttgctggagcaggctttggtgatc
gaggagcagctgcgtagggcggcctacctgaacatgacagaggacccggcccacccctcc
atggccctcaacactcgcttcagtgaggtagagtgtctcgccgagtcccatcagcacctc
agcaaggagtccatgtctggaaacaagcctgccaacgcggtgctccataaagtcctcaaa
cagctggaggaactgctgagtgacatgaaggctgacgtcactcgtctcccagcaaccatc
gccaggatcccccccgtggccgtacggctgcagatgtctgagaggaacatcctcagccga
ttggccagccggggtcccgaggtcgggatccagaatccatcacaaacctcacagcaaatg
caggtgccgcgctga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (43)   
   KEGG ORTHOLOGY (1)   
   RefGene (39)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (6)   
   UniProt (1)   
   RefSeq(pep) (5)   
DNA sequence (9)   
   RefSeq(nuc) (5)   
   GenBank (2)   
   EMBL (2)   
Protein domain (14)   
   Pfam (14)   
All databases (76)   

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