KEGG   Nothobranchius furzeri (turquoise killifish): 107380728
Entry
107380728         CDS       T05163                                 
Symbol
brip1
Name
(RefSeq) Fanconi anemia group J protein
  KO
K15362  fanconi anemia group J protein [EC:5.6.2.3]
Organism
nfu  Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03440  Homologous recombination
nfu03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:nfu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    107380728 (brip1)
   03460 Fanconi anemia pathway
    107380728 (brip1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:nfu03400]
    107380728 (brip1)
Enzymes [BR:nfu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     107380728 (brip1)
DNA repair and recombination proteins [BR:nfu03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    BRCA1-B complex
     107380728 (brip1)
   FA (Fanconi anemia) pathway
    Downstream FA components
     107380728 (brip1)
SSDB
Motif
Pfam: Helicase_C_2 DEAD_2 DEAD ResIII
Other DBs
NCBI-GeneID: 107380728
NCBI-ProteinID: XP_015807540
UniProt: A0A1A8A7G9
Position
sgr06:complement(43373551..43461728)
AA seq 1180 aa
MRPLTGSRSVARGRLELSSVVKLSMASDSSEYVIGGVKVLFPCKPYPSQLAMMNSIIRGL
NHGQHCLLESPTGSGKSLALLCSTLGWQQAQAAKQQEEGGSTGDKTQPDKNSSDQIKSKS
SPPCLCFCHSKDGKAAATAQPAACQQPARASAMAPNHAPSAETPRGRRKSVASQLSERLQ
VSLPSSPEEDEDFQPLGKRFRSSEHKNPKWQPGTLISSSEQENQPPSPEKSAAATSSKAA
GLSPSCSMSEPCSHCPCASAKDGVKDKDGKKKIPKIFFGTRTHKQITQIAHELKRTAYSS
VQMTILSSRKHTCVHSDVVPHFNRNELCKELLEDKEGRSCRYYHGVKKMGTQHLLQSVHG
LCGAWDVEDLVSLGRRLRSCAYYAARELMQGASIIFCPYNYLLDPMIRENMDIDLTGQIL
VLDEAHNIEDCARECASFTVDNNTLQMSKEELDGLIKLNIRCSDHEPLRGFCCMLLNLIC
ESQALLSERGYESSCKVWSGTEILQIFHGFGIIPDTFSNLKKHLTAVLEKEERAGVVDGK
ELMKTVPTISSATATFFKSIFMVLDFLFRDNCRFAEDYRVALQQSYAWVNRVPPDVPDAN
GFFVRPHPTHRKSARVKTEVQMLSFWCLNPAVAFSDLSRSVHSIVLTSGTLSPMGSFSSE
LEVKFTNQLEANHVINKSQVWVGTVGSGPSGRKLQATFQQAETFAFQDEVGDLLLQVCQV
IAKGVLCFLPSYKMLDKLRDRWLSTGLWMKLERHKTVITEPRGGGKGDFDELLQMYYEAV
KYSEGMTGALLFAVCRGKVSEGLDFTDDNARAVVTIGIPFPNFKDLQVELKMKYNNQHCK
SRGLLSGNRWYEIQAYRALNQALGRCIRHRKDWGALILVDDRYRNNPNKYITGLSKWVRQ
LVQHHNTFSGAVQSLVAFCQEQQKVQVDLADSQIQTKALASCEKLPEAEEDTSSNLKAEQ
SNAELLTMPQCSPVGVLPRQPKAAQPLCDIFTRCPINSIFGKPIFKGKAPRESSPHRDIS
SPVTPEKQTGTNSDRIREKSKDLAPAQSIETTPPRGEMKTSSASTSDEDETIFFTPELFE
AEGDERENSNPERENPESPSGSVPQTLTNFDPRIPAGSSFSDGMESAELSQKPDQGLRGQ
SDEGGKDEAQSRQTGRRLHRLSRSRFRSPPSQTGDHHEHL
NT seq 3543 nt   +upstreamnt  +downstreamnt
atgcgacctctaaccggaagtagaagcgtggctcgtggcaggttagagctgagtagcgtg
gtaaagttgagtatggcttccgacagctctgagtatgttatcgggggagtgaaggtcctc
tttccctgtaagccttacccatctcagctggctatgatgaactcaatcatacgaggcttg
aaccatgggcagcactgcctgctggagagtcccactggcagtgggaagagtctggcctta
ctatgctccactttgggttggcaacaagctcaggctgctaaacagcaggaagaaggaggt
tccacgggagacaagactcagcctgataaaaactcatcagatcagataaagtcgaaatcc
tcccccccgtgtctgtgtttttgtcacagcaaagatggtaaggcagcagctacagcgcag
ccagcagcttgccaacagcctgcccgggcttcagccatggcaccaaaccatgcaccatca
gcagaaacgccacgaggcagaaggaagtctgtggcgtctcagctgtctgaaaggctccag
gtttctctcccttccagtcctgaggaggatgaagactttcagccactgggaaaacgcttt
cgttcctcagagcacaagaaccctaaatggcagccaggaaccctaatttccagctcggag
caggaaaatcagccaccaagtcctgaaaagagtgcagcagcaacaagcagcaaagcagct
ggtttgtccccttcatgcagcatgtctgagccctgctcccactgcccttgtgcctcagcc
aaagatggtgtgaaggacaaagatggcaaaaagaagattccaaagattttctttggcaca
cgcacccataaacagattactcagattgcacatgagctgaagcgcacagcgtactccagc
gtacagatgaccatcttgtccagcagaaagcacacctgtgttcattcagatgtggtacct
cacttcaaccgcaacgagctgtgcaaggagctgctggaggacaaagaggggcgctcgtgt
cgctactaccatggagtcaaaaagatgggaactcagcatttactgcagtcagtccatgga
ctgtgtggagcatgggacgtggaggacctggtgtctctaggccgacggctccgctcctgt
gcttactacgctgctcgtgagctcatgcagggcgcctctatcatcttctgtccctataac
tacctgctggaccccatgatcagagagaatatggacatagacctgacaggacagatcttg
gtgctggacgaggcccacaacattgaggattgtgcacgagagtgtgccagctttactgta
gacaacaacactctgcagatgtccaaagaggagctggatggcttgatcaaactcaacatc
agatgctctgaccatgagcctctcaggggcttctgctgcatgttgctgaacctgatctgc
gagagccaggccctgctgtctgaacgtgggtacgagagttcctgcaaagtctggagtggg
acagaaatactgcagatctttcatggttttggcatcattccagacaccttcagcaattta
aagaaacacctcacggcagttttggagaaggaggagcgagctggtgtcgtcgacggtaag
gagctcatgaagacggtcccaaccatcagctcagcaaccgccaccttctttaaaagcatc
ttcatggtgctggactttctcttcagggacaactgcaggtttgctgaggactaccgtgta
gctctgcagcagagctatgcttgggtaaatcgggtacctcctgatgtccctgatgctaac
gggttttttgtccgtccacatcctacacaccgtaagagtgctcgcgttaagacggaggtc
cagatgttgagtttctggtgcttgaatccagctgtggctttctctgacctgagcaggtca
gtgcacagcattgtgctgacatcaggaaccctatcacccatgggctctttttcctctgaa
cttgaggtgaaattcaccaaccagctggaggccaaccatgtgatcaacaaatcccaggtt
tgggtgggtactgttggatctggaccaagtggtcgaaaactccaggctacctttcagcaa
gctgaaacatttgcctttcaggatgaagtgggtgacttgcttcttcaggtctgccaggtt
atagctaagggagtactctgcttcctgccttcttacaagatgctggacaagctgagagac
cgttggctcagcaccggtttgtggatgaagcttgaacggcacaaaaccgtaatcacagag
ccacgaggcggcggcaagggggatttcgacgagctacttcagatgtactatgaggctgtc
aaatacagcgagggaatgactggtgcactgctgtttgccgtgtgcaggggtaaggtcagc
gaaggcctggactttacagatgacaatgccagagcagtggtcaccatcggaattcctttc
ccaaacttcaaagaccttcaggtggagctgaagatgaaatacaacaaccagcactgtaag
tccagaggtcttctttctggtaatcgctggtacgagatacaggcctacagagctctgaac
caggccctggggaggtgcatccgccacaggaaggactggggagccctgattctagtggat
gaccgatacaggaacaatcccaacaagtacatcacaggtttgtctaaatgggtccgtcag
cttgtccagcatcacaacaccttcagtggtgccgtccagtctctggtagctttctgccag
gaacagcagaaggtccaagtggaccttgctgacagccagatccagaccaaagccctcgcc
tcatgtgagaaactgccagaagctgaggaggacacaagctcaaatctgaaagctgagcaa
agcaacgcagagctgctgacaatgccgcaatgctctccagtgggggtgcttccccgtcag
cctaaagcagctcagcctctgtgtgacatcttcacccgctgccccatcaacagcatcttt
gggaagcccatctttaaaggaaaagcaccaagagaatctagcccacatcgggacatctcc
tctccagtgactcctgagaagcagactggtaccaattctgatcgcatcagagaaaagtcc
aaggatctagctccagcacagtctatagaaaccacccctcctaggggtgagatgaaaaca
tcctcagcaagcacatctgatgaagatgagaccattttctttactccagaactttttgag
gcggagggagatgaaagagaaaactcaaacccagaaagagaaaatcccgagtccccctct
ggatccgtcccacagacattgacaaattttgatccaagaattcctgcgggatcttctttc
tcagatggtatggaaagcgccgagctgtctcagaagccagatcaggggctgagaggtcag
agcgatgaaggaggaaaggatgaggcccagagcagacagacgggcagaaggctccacagg
ctgtccagatccaggttcagaagccccccctcccagacaggtgaccaccatgaacacctg
taa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (38)   
   KEGG ORTHOLOGY (1)   
   RefGene (34)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (4)   
   Pfam (4)   
All databases (58)   

Download RDF
DBGET integrated database retrieval system