KEGG   Nannospalax galili (Upper Galilee mountains blind mole rat): 103736636
Entry
103736636         CDS       T03372                                 
Symbol
Clp1
Name
(RefSeq) cleavage and polyadenylation factor I subunit 1
  KO
K14399  polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
Organism
ngi  Nannospalax galili (Upper Galilee mountains blind mole rat)
Pathway
ngi03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:ngi00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    103736636 (Clp1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ngi03019]
    103736636 (Clp1)
Enzymes [BR:ngi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.1  Phosphotransferases with an alcohol group as acceptor
    2.7.1.78  polynucleotide 5'-hydroxyl-kinase
     103736636 (Clp1)
Messenger RNA biogenesis [BR:ngi03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Pre-mRNA cleavage factor IIm (CFIIm)
     103736636 (Clp1)
SSDB
Motif
Pfam: CLP1_P CLP1_N Clp1 ATP_bind_1 MMR_HSR1 AAA_18 TniB AAA_16 AAA_22 nSTAND3 CbiA
Other DBs
NCBI-GeneID: 103736636
NCBI-ProteinID: XP_008834374
Position
Un
AA seq 428 aa
MEKMGEEANDDKKPTTKFELERETELRFEVEASQSVQLELLAGMAEIFGTELTRNKKFTF
DAGAKVAVFTWHGCSLQLSGRTEVAYVSKDTPMLLYLNTHTALEQMRRQAEKEEERGPRV
MVVGPTDVGKSTVCRLLLNYAVRLGRRPTYVELDVGQGSVSIPGTMGALYIERPADVEEG
FSIQAPLVYHFGSTTPGTNIKLYNKITSRLADVFNQRCEVNRRASVSGCVINTCGWVKGS
GYQALVHAASAFEVDVVVVLDQERLYNELKRDLPHFVRTVLLPKSGGVVERTKDFRRECR
DERIREYFYGFRGCFYPHAFNVKFSDVKIYKVGAPTIPDSCLPLGMSQEDNQLKLVPVTP
GRDMVHHLLSVSTAEGTEENLSETSVAGFIVVTSVDLEHQVFTVLSPAPRPLPKNFLLIM
DIRFMDLK
NT seq 1287 nt   +upstreamnt  +downstreamnt
atggaaaagatgggcgaggaagccaatgatgacaagaagccaacgactaaatttgaacta
gagcgagaaacagaactgcgctttgaggtggaggcatcccagtcagttcagttggagttg
ttggctggcatggcagagatctttggcacagagctgacccgaaacaagaaattcaccttt
gatgctggtgccaaggtggctgtttttacttggcatggctgttccctgcaattgagtggc
cggacggaggtggcttatgtctctaaggatacccctatgttgctttatctcaacactcac
acagccttggagcagatgaggaggcaagcagaaaaggaggaagagagaggcccccgagtg
atggtagtgggtcccaccgatgtgggcaagtccacagtgtgccgactattactcaactat
gcagtgcgattgggccgccgtcctacctatgtggaactggacgtgggccagggctctgtg
tcaatcccgggcactatgggggccctctacattgagaggccagcagatgtagaagaaggt
ttctctatccaggcccctctggtatatcattttggctccaccaccccaggcaccaacatc
aaactttataacaagattacatcacgtttagcagatgtgttcaaccaaaggtgtgaagtg
aacagaagggcatctgtaagtggctgtgtcattaacacctgtggctgggtcaagggctct
ggttaccaggctttggtgcatgcagcttcagcttttgaggtggatgtcgttgtggttctg
gatcaagaaagactgtacaatgaactgaaacgggatctgccgcactttgtacgcactgtg
ttgcttcctaaatcagggggtgtggtggaacgcaccaaggacttccggcgggaatgtagg
gatgagcggatccgggagtacttctatggattccgaggctgtttctatccccatgctttc
aatgtcaagttttcagatgtgaagatctacaaagttggggcacctaccatccctgactcc
tgtttgcctttaggcatgtctcaggaagacaatcagctcaagttagtacctgtcacccct
ggccgagatatggtgcaccatctactgagcgtcagcacggctgaggggacagaggagaac
ctctctgagacaagtgtggctggcttcattgtggtgaccagtgtggacctggaacatcaa
gtgtttactgtcctgtctcccgctccccgcccactgcccaagaacttccttctcatcatg
gatatccggttcatggatctcaagtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (6)   
   RefSeq(pep) (6)   
DNA sequence (10)   
   RefSeq(nuc) (6)   
   GenBank (2)   
   EMBL (2)   
Protein domain (11)   
   Pfam (11)   
All databases (40)   

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