KEGG   Naegleria gruberi: NAEGRDRAFT_57625
Entry
NAEGRDRAFT_57625  CDS       T01241                                 
Name
(RefSeq) RNA dependent RNA polymerase
  KO
K11699  RNA-dependent RNA polymerase [EC:2.7.7.48]
Organism
ngr  Naegleria gruberi
Brite
KEGG Orthology (KO) [BR:ngr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ngr03036]
    NAEGRDRAFT_57625
Enzymes [BR:ngr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.48  RNA-directed RNA polymerase
     NAEGRDRAFT_57625
Chromosome and associated proteins [BR:ngr03036]
 Eukaryotic type
  Gene silencing
   RNA interference (RNAi) pathway
    RDRC (RNA-directed RNA polymerase complex)
     NAEGRDRAFT_57625
SSDB
Motif
Pfam: RdRP Sel1 TPR_11
Other DBs
NCBI-GeneID: 8859419
NCBI-ProteinID: XP_002679167
JGI: Naegr1_57625
UniProt: D2VAG1
AA seq 1235 aa
MPFKQNDSNNQTTANSSTEQLIDNLFYCYHLSRNKTLPLIRNEHDAGICLARLSHLRGEG
YSGMSFDQRFELMKKVSKKVIVTYPEGLESINNWFLEGKDDKSYSDGRAGLKLSRMRSIT
FYSFIAAEKAELCVIFKSSPKDNFVIGRFRQEFGGDCILNVSFIFSRMGLKSQRMVRDEQ
MNGSILNPFSFEEIDFFFLLTKMKILKQDTDIINDVFDKEYIKKLKHQSRFRNELITWKK
AFKDNINPLPFKFGKYQFNILCQNTSGMHSYKYVYCCPQLANTQDPTRKLSTVEQIKEWA
IPKELNPTLYDSKNILKQRIRLALYNTPVIPTEIIQYFTVIPDIERDGFNFTDGCGFISP
DMAKKVYKHILNAENRVLIKTDQEEDEIGYDEQRGFDLFSDSSYIPSAFQIRFRGAKGML
VVNTETFEKYRVHIVLRESMVKCKTNEKVDQSFSTLQIVGHSSPCELTRVNSTIMHLLSG
CDSNGEVRKRVLEMASAHVQNSLDKYVHEDTEVIARQYMKDNNLISLNVLSTTKNKGFAF
LAGPYKSLITSLKIPFSNSRRLYGVVDPYEVLNEGEVFVQISSFKNPSHKQVLQKEIVLT
KEPCLHRGDLRKIKAVYYPKLSHLCDVIVFSSKGKRPVPNMISGSDLDGDQFFVCWDDLI
VDNVKIFEPGLFDEEIKQEDIRPFEPDVFKDWVGVRHAYVDHHGSNWTNDENWNKEMRRL
CEIVNHAVGSPKNGVISVATREEDLRFIDNFPGYPHYHQSKRGALKKSSSLASEVYQQMV
DCITKTLELKEHNIRISVQNDKDHILESIRLEIFDLLLANTSNNFGEKIMKKISEFIGRA
LTIKHRAQFLAEFFNLMYEFFTIQSKELVLFNLKTTIQNLSESGMKTAIESVISNKHVLF
ISGFDETQFTNRELVPKKLKIDFSCSVYEINSEMPNYEEFLKQELFCAAQEGLQLELGIN
LLFGKTLITVLQEVKQVRNKILFDPKACFDFGKSKVLSNERFGLKLIELAARYDYGPALN
YLGELYEIGSVEIGYEKDLKKALSLFERSSLHNNDEAFMKLGDYYYFNSNGDPIPYYTKG
AELGNIYCMTKLSTIYFDSDNLQKSFQYSLQAALIGDSNSMKNVAISYMHGEGVDQDDAL
FLYWINKAIEMQVKDSMTILADFHAFKNDFKEAFVWYTRALEFDDSDIDAKQKLGVIYMY
GLDIEQNYAKGSKMINETGGNLEEVLSNFRIFLQK
NT seq 3708 nt   +upstreamnt  +downstreamnt
atgcccttcaaacagaatgattctaacaatcaaacaacagcaaattcgtccaccgagcaa
ttaatagataatctcttctactgttatcatctttctcgaaataaaacacttccattgatt
cggaatgaacatgatgctggtatttgtcttgccagattgagtcatctcagaggggaaggt
tattcaggtatgtccttcgatcagagattcgaattaatgaagaaagttagtaagaaggta
atagttacctaccccgaaggtttggaaagtatcaacaactggtttttggaaggaaaagat
gataaatcgtattctgatggaagggcaggattgaaattgagtagaatgaggtcaattacg
ttctattcttttattgctgctgagaaagcagagctatgtgttatatttaaaagctcacca
aaagacaattttgttattggaagatttagacaagagtttggaggtgattgcatattgaat
gtatcgtttatattctcgagaatgggattgaaatctcaaagaatggttcgagatgaacaa
atgaatggttctattctcaatccatttagctttgaagaaatcgattttttcttcctgttg
accaaaatgaaaattctgaaacaggatactgatattattaatgatgtgtttgataaggag
tacatcaagaaattgaaacatcaatcaagatttagaaatgagttgataacttggaagaaa
gcatttaaagacaatatcaatccattacctttcaaatttggaaaatatcaatttaatatt
ctttgccaaaatactagtggaatgcattcatataagtatgtgtattgttgccctcaatta
gcaaatacgcaggatccaacaagaaagctctcaactgttgaacaaattaaagaatgggca
attcctaaagagcttaatccaactctgtatgattcgaaaaatatattaaagcagagaatt
agattggctctttataatacaccagtgatcccaacagaaatcattcaatatttcacagta
attccagatattgaaagagatggtttcaactttacagatggttgtggatttatttctcca
gacatggctaagaaagtttacaaacacatcttgaatgccgaaaatagagttttgataaaa
actgatcaagaggaagatgaaattggatatgatgagcaacgtggttttgatttgttttct
gatagctcttacattccttcagcgtttcaaattagatttagaggagcaaaaggaatgctt
gttgttaatactgaaacatttgaaaagtatagagttcacattgtactgagagaatcaatg
gtcaaatgtaaaactaatgaaaaagttgaccaaagttttagcactcttcaaatagttggt
cattccagtccatgcgaattaacaagagtcaactctacaatcatgcacttactgagtgga
tgtgattctaacggagaagtgagaaagagagtattagagatggcatctgctcacgttcaa
aactctttagacaaatacgttcatgaagatactgaagttattgcgaggcaatatatgaaa
gataataatttgatttcccttaatgttctctcaaccacaaaaaacaaaggatttgcattt
ctggctggtccatacaagagtctcataacatcattgaaaattccattctcaaattcaaga
agattatatggagtggtagatccttatgaagtcctcaatgaaggagaggtatttgttcag
atttcttcatttaaaaatccaagtcacaaacaagttctacagaaagaaattgtattgaca
aaagaaccttgtcttcatagaggtgacttgagaaaaatcaaagcagtttactatcccaaa
ttatctcacttgtgtgatgttattgttttttcatcaaaaggtaaaagacctgtaccaaat
atgatatcaggatcagatttggacggagatcaattctttgtatgctgggatgatttaatt
gtagataatgtcaaaatatttgaacctggcttgtttgatgaagaaatcaaacaagaagat
attcgtccatttgaaccagatgtttttaaagattgggttggagtaagacatgcctacgta
gaccatcatggatctaactggacaaatgatgaaaattggaataaggaaatgagaagactt
tgtgaaattgtcaatcatgcagtgggctctccaaagaatggtgtaatttctgtagcaact
agagaagaggatttgagatttatagataatttccctggatatcctcactaccatcaatcg
aaaagaggtgccttgaaaaaaagctcttctcttgcttctgaagtatatcaacaaatggtt
gattgcataactaaaactctggaactgaaagagcacaatatacgcatatctgtacaaaat
gataaggatcacattttggaaagtattagattggagattttcgacctattacttgcaaat
acttccaataattttggagaaaaaatcatgaagaaaataagcgaatttattgggagagca
cttactatcaaacatagagctcagtttcttgcagagtttttcaatttaatgtacgaattt
tttacgatccaatcaaaagagctagttttgttcaatcttaaaacaaccattcaaaattta
tcagaaagcggaatgaaaactgcaattgaatccgtgatatccaacaagcatgttctgttt
atatctgggtttgatgaaacacaatttactaatcgagaattggtaccaaagaaactgaaa
attgacttttcctgttctgtttatgagatcaactctgaaatgccaaattatgaagagttt
ttgaaacaagaattgttttgtgctgctcaagaaggcttacaattagaattgggaattaat
ttactttttggaaagactcttattactgtactacaagaggtgaagcaagtaaggaacaaa
attctttttgatccgaaagcttgcttcgattttggaaagtccaaggttttatcaaacgaa
aggtttggactaaaattaatagagctagcagctagatacgactatggtcctgctctcaac
tacttgggcgaattgtacgaaattggaagtgttgaaatcggatatgagaaagacttgaaa
aaagctctttcattattcgaaagatcttctcttcacaacaacgatgaagcatttatgaaa
ctaggagattattactatttcaattcgaatggtgatcccatcccttactacaccaaagga
gccgaattgggaaatatatattgcatgacaaaattatcaaccatttatttcgactcagat
aatcttcaaaaatctttccaatacagcttacaagctgcacttattggggacagtaattca
atgaaaaatgttgctatttcatatatgcatggcgagggagtggatcaagacgacgcacta
ttcttgtattggatcaataaggcaatagaaatgcaagttaaagacagcatgacgattctt
gcagattttcatgcatttaagaatgatttcaaggaagcttttgtgtggtatacaagggct
cttgaatttgacgatagtgatatagatgcaaagcaaaagttaggagtaatatacatgtat
ggattggatatcgagcagaattatgcgaagggtagtaaaatgattaatgaaactggaggt
aacttagaagaagttcttagcaattttagaatatttctccaaaaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (34)   
   KEGG ORTHOLOGY (1)   
   RefGene (29)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (45)   

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