KEGG   Nocardia otitidiscaviarum: FOH10_10470
Entry
FOH10_10470       CDS       T06114                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
nod  Nocardia otitidiscaviarum
Pathway
nod03030  DNA replication
nod03410  Base excision repair
nod03420  Nucleotide excision repair
nod03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:nod00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    FOH10_10470 (ligA)
   03410 Base excision repair
    FOH10_10470 (ligA)
   03420 Nucleotide excision repair
    FOH10_10470 (ligA)
   03430 Mismatch repair
    FOH10_10470 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:nod03032]
    FOH10_10470 (ligA)
   03400 DNA repair and recombination proteins [BR:nod03400]
    FOH10_10470 (ligA)
Enzymes [BR:nod01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     FOH10_10470 (ligA)
DNA replication proteins [BR:nod03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     FOH10_10470 (ligA)
DNA repair and recombination proteins [BR:nod03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     FOH10_10470 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     FOH10_10470 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     FOH10_10470 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      FOH10_10470 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_5 HHH_2 BRCT IclR DNA_ligase_ZBD RNA_ligase PTCB-BRCT
Other DBs
NCBI-ProteinID: QDP79091
UniProt: A0A516NJL1
Position
complement(2415050..2417041)
AA seq 663 aa
METGERIQQLADRIMALRDAYYQGSPLVADAEYDAIEDELRDLVAAHPELTPDPNPLEQV
GAPTVLHAPIRHARPMLSLEKATTPEQVEAFFNRFPGQPVVVMPKLDGLSLSLVYEDGRL
TRAVTRGDGTTGDDVTVLVRALVDGVPERIEAPGRVEVRGEAVMLRSTFAAYNTAHPDKP
LINPRNAAAGTLRAKDPATVAERRLRFFGFDLDTSAGGAALDLEEGLTTLGIAGAQMRHC
TDAAQAQAAITAIEQGRNALDYDLDGAVLRLADRDAYAAAGTRSSSPRGALAFKFAAEEK
TTLLADVVWDVGKTGKIVPVAWLEPVFVGGTTVTKATLANQEVIRARDIKIGDTVLVRRA
GDVIPFVAGVLDASKRTGAEREILPPTACPSCEQPVTEQGNSRELFCTNVSCSAQTVRRL
IHWASRAAADIDAIGPVWIERLAEAGMLTNPSDFYTLTKESLLDFDRIGEVSAQRMIDSI
DASRQVGLRRALIGLAIPMASDGTAARLARSGFASLEEVAEAGEERLVAVEDIGAKVAAS
LITHLTRLRPELERLRAAGVSLDVREEDLPPVVAAGAPLAGKTVVITGAISDPRSGEKVA
RPTFQRLCEKAGATAASSVSANTDLLITGAGVGDAKLTKAEKLGVEVVDQGRIWTMLIDA
NIV
NT seq 1992 nt   +upstreamnt  +downstreamnt
gtggagactggggaacgcatacaacagctcgcggaccgcatcatggcgctgcgggacgcc
tactatcagggctcgccgctggtcgcggacgccgagtacgacgcgatcgaggacgagctg
cgcgatctggtcgcggcgcatccggagctgacgcccgatccgaatccgctggagcaggtc
ggcgcgccgactgtgctgcacgccccgatccggcacgcgcgtcccatgctgtcgctggag
aaggcgaccacgcccgaacaggtcgaggcgttcttcaaccgcttccccggccagccggtg
gtggtgatgccgaaactcgacggcctgtcgctgtcgctggtgtacgaggacgggcggctg
acgcgggcggtgacccggggcgacggcaccaccggcgatgatgtgaccgtgctggtccgc
gccctggtcgacggggtgcccgagcggatcgaggcgccgggccgggtggaggtgcgcggc
gaggcggtgatgctgcggtcgaccttcgccgcctacaacaccgcgcatccggacaagccg
ctgatcaatccgcgcaatgccgccgcgggcacgctgcgcgccaaggatccggccaccgtg
gccgaacgccggctgcgattcttcggcttcgatctcgacacctccgcgggcggagcggcg
ctcgatctggaggagggtctgacgacgctgggtatcgcgggcgcgcagatgcgccactgc
accgacgccgcgcaggcgcaggccgccatcaccgccatcgagcagggccgcaacgcgctg
gattacgacctggacggggcggtgctgcgcctggccgatcgtgatgcctacgcggcggcc
ggtacccggtcgagctccccgcgcggcgcgctggcgttcaagttcgccgccgaggagaag
acgacgctgctcgccgacgtggtctgggatgtgggcaaaaccggcaagatcgtgccggtg
gcctggttggagccggtgttcgtgggcggcaccaccgtcaccaaggcgaccctggccaat
caggaggtgatccgggcacgcgacatcaagatcggtgacacggtgctggtgcgccgtgcg
ggcgatgtgattccgttcgtggcgggcgtgctcgacgcctcgaagcgcacgggtgccgaa
cgtgagatcctgccgccgaccgcctgcccctcctgcgaacagccggtgaccgaacagggc
aacagccgagaactgttctgcaccaacgtgtcctgttccgcgcagacggtgcggcggctc
atccactgggcctcgcgcgcggccgccgatatcgacgccatcggtccggtgtggatcgag
cgcctggccgaggcgggcatgctgaccaacccctcggatttctacacgctgaccaaggag
agcctgctcgatttcgaccggatcggcgaggtctcggcccagcgcatgatcgattcgatc
gacgccagccgccaggtcggcctgcgccgcgccctgatcggattggcgatcccgatggcc
tccgacggcaccgccgcccgcctggcccgctccggtttcgcctccctggaggaggtcgcc
gaagcgggcgaggagcgcttggtggcggtggaggacatcggcgcgaaggtcgccgcctcc
ctcatcacccacctcacccgcctgcgcccggaactcgagcggctacgcgcggcgggggtc
tccctcgacgtccgcgaggaggacctgccgccggtcgtcgcggcgggcgcgcccctggcg
ggcaagacggtggtcatcaccggcgcgatcagcgacccgcgctccggcgagaaggtcgcc
cgccccaccttccagcgcctgtgcgaaaaggccggtgccacagcggcatcctcggtgtcg
gcgaataccgacctgctcatcaccggtgcgggcgtcggcgacgccaagctgaccaaggcg
gagaagctcggtgtggaggtcgtcgaccagggccggatctggaccatgctgatcgacgcc
aatatcgtctga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (28)   

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