KEGG   Nocardioides jishulii: FCL41_03965
Entry
FCL41_03965       CDS       T06163                                 
Name
(GenBank) DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
noi  Nocardioides jishulii
Pathway
noi03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:noi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    FCL41_03965
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:noi03400]
    FCL41_03965
Enzymes [BR:noi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     FCL41_03965
DNA repair and recombination proteins [BR:noi03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     FCL41_03965
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: QCX26791
Position
838364..839305
AA seq 313 aa
MRPMLATRGDHVPTGPDWVHEVKWDGMRVIVEVTGGRARLTSRNGNDVTSTFPELSTLAL
PDLVLDGEVVAFTDGRPDFGALATRLQRSGRGARMRAEVVPVTLLVFDLLRLGEQDLRGL
PLSERRELLDSLHLGDDQVQVPPTYDDGQMLLEATRAQELEGIVSKRLASRYEEGVRSRS
WLKFAHRSRTSWVVGGWRHETGSPARIGAVLVGEPTADGFRYRGRVGSGITGRTGVALKE
LLVARAADASPFDEELPRADALGTHWVRPEVVVDVESLGFSANGRLRQPSFRGVRVDLTP
ADLLTQSREADDA
NT seq 942 nt   +upstreamnt  +downstreamnt
atgcgtccgatgctcgccacccgtggagaccacgtgcccaccgggcccgactgggtccac
gaggtgaagtgggacgggatgcgcgtgatcgtcgaggtcaccgggggccgcgcgcggctc
acgagtcgcaacggcaacgacgtgacgtcgaccttccccgagctcagcacgctcgcgctc
cccgacctcgtgctcgacggcgaggtggtcgccttcaccgacggccgccccgacttcggc
gcgctggcgacccggctccagcgcagcggccgcggcgcccggatgcgggccgaggtggtg
ccggtgacgctgctggtcttcgacctgctccgcttgggggagcaggacctgcgcggactg
cccctgtcggagcggcgcgagctgctcgactccctgcacctgggcgacgaccaggtgcag
gtgcccccgacgtacgacgacgggcagatgttgctggaggccacccgtgcgcaggagctg
gagggcatcgtctccaagcggctggcctcgcgctacgaggagggcgtacgcagccgcagc
tggctcaagttcgcccatcgctcgcggacgtcctgggtggtcggagggtggcgccacgag
accgggtcgccggcgcggatcggggcggtgctggtgggggagccgaccgcggacggcttc
cgctaccgcggtcgggtcgggtcgggcatcaccggacggaccggcgtcgccctcaaggag
ctgctggtggcccgtgccgccgacgcctccccgttcgacgaggagctgccgcgcgccgac
gcgctgggcacgcactgggtacgtcccgaggtcgtggtcgacgtggagtcgttgggcttc
tcggccaacggccgcctgcgacagccgtccttccgcggcgtgcgcgtcgacctgacgccg
gccgacctgctcacccagtcgagggaggcggacgatgcctga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (3)   
   Pfam (3)   
All databases (17)   

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