KEGG   Novosphingobium sp. PP1Y: PP1Y_AT2572
Entry
PP1Y_AT2572       CDS       T01515                                 
Name
(GenBank) type IV secretion system protein VirD4
Organism
npp  Novosphingobium sp. PP1Y
Pathway
npp03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:npp00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    PP1Y_AT2572
SSDB
Motif
Pfam: T4SS-DNA_transf TraG-D_C TrwB_AAD_bind PAXIP1_C
Other DBs
NCBI-ProteinID: CCA91227
UniProt: F6IGG1
Position
275204..277264
AA seq 686 aa
MNATRILWGQVIAVISVTLLGIWSATQWTAHALAHQPELGQPWFWLGPWPIYPPYAFFWW
WFAFDAYAPQIFQTGAFIAVSGVMAAIVIAIAMSVWRAREEKQSETYGSARWATDKEIRK
AGLLKQDGVVIGSHKNRYLRHNGPEHILCFAPTRSGKGVGLVIPSLLAWPGSCIVHDIKG
ENWDLTAGFRARHGRVLLFDPTNPASNPYNPLLEVRKGDWEVRDAQNIADILIDPEGSLE
KRTHWEKTSHSLLVGTILHVLYAEKDKSLAGVAGFLSDPRRSIETTLHRMKTTPHLGKDG
VHPVVAAAAQELLNKSDNERSGVLSTAMSFLGLYRDPVIAQVTGASDWRITDLVDSAAPV
SLYLVIPPSDISRTKPLVRLMLNQIGRRLTEELKAKGRRQRVMFMLDEFPALGRLDFFES
ALAFVAGYGIKAFLIAQSLNQIEKAYGSNNAILDNCHVRVAFAANDDNTASRVSNALGTA
TQMRAMKNYAGHRLSPWLGHIMVSRTETPRPLLTPGEVQQFSEHEEIVLVASTPPIRAEK
AKYFLDPRFRARLLPAPTPKPLHPKKRPKDDWSALAPIAAPLPVKPAQAEAKSSEQPPVD
QPKPDVPSDADGAESENDTANSGIRREPELGEHEDVVPAPKPPVNEFDLDRDAPEDDAAR
AKREADRTMNRNARNASLDPDDGIDL
NT seq 2061 nt   +upstreamnt  +downstreamnt
atgaacgccacccgtattctttggggtcaggtcatcgccgtcatcagcgttactttgctt
ggcatctggtctgccacccaatggacggcccacgcccttgcgcatcaacccgagctcggc
cagccctggttctggcttggaccttggccaatctacccgccctacgccttcttctggtgg
tggtttgcgtttgacgcctatgcaccacagatcttccagaccggggcattcatcgcggtc
tcgggtgtcatggccgccatagttatcgcgatcgccatgtcggtgtggcgcgcgcgggag
gagaagcagtcagagacctatggttcggctcgctgggcgaccgacaaggaaatccgcaag
gctggcctcctgaaacaggacggcgtggtgatcggctcgcacaagaaccggtatctgcgg
cacaatggccccgagcatattctctgctttgcgccgacccgttccggcaaaggcgttggt
ctcgtcatcccgtcgctgctcgcctggccgggcagttgcatcgtccacgatatcaaaggc
gagaactgggatctgacggctggctttcgcgcgcggcatggccgcgtcctgctgttcgat
ccgaccaaccccgcatccaacccctacaatccgctgctcgaagtccggaagggcgattgg
gaggtgcgtgacgcccagaacatcgcagacatattgatcgaccccgaagggtcactggaa
aagcgcacgcattgggagaagaccagccactcgctactcgtcggcaccatcctgcacgtc
ctctatgccgagaaggacaagtcgctggccggggtcgctggcttcctttccgatccgcgt
cgttcgatagaaaccacgctgcaccggatgaagacgaccccgcacctcggcaaagatggt
gttcaccccgttgtggctgccgcagcacaggaactgctgaacaagtctgacaatgagagg
tctggcgtcctgtcgacggccatgtcgttcctcggcctctaccgcgaccctgtgattgcg
caggtcaccggagcctcggactggcgcatcaccgatcttgtcgattcagcggcacctgtg
tcgctctatctggtcattcctccttccgatatcagccggaccaagccgctcgtccgcctg
atgctcaatcagatcgggcgccgcttgaccgaagagctaaaggccaagggtcgccggcag
cgcgtgatgttcatgctcgatgaattcccggctttggggcggctagacttcttcgaaagc
gcactggcctttgttgcaggctacgggatcaaggcattcctgatcgcgcagtcgctcaac
cagattgaaaaagcctatgggtcaaacaacgccattctcgacaactgccacgtccgcgtc
gcgttcgcggccaatgatgacaataccgccagccgcgtttccaatgcgctcggcaccgcc
acccagatgcgggcgatgaagaattatgccggacatcgcctttcgccatggctcggccat
atcatggtctcgcgtactgagaccccaaggccattgttgacgcctggcgaagttcagcaa
ttttcggagcacgaggagattgtgctggtggccagcacgccgccgatccgcgcggaaaag
gcaaaatactttctcgacccgaggttccgcgcgcgccttctaccggcacccacacccaaa
ccgctgcacccgaagaaacggccaaaggacgactggtctgcgctcgcacccattgcggca
ccgctgccggtcaaaccagcccaggccgaagcgaaaagctccgaacagccgcctgttgat
cagccaaagccggatgtgccgtcagatgccgatggggccgaatccgaaaatgatacggca
aactccgggatcaggcgagaacccgaactgggggaacatgaggatgtcgttcccgccccc
aagccaccggtcaacgagttcgatcttgatcgcgatgcgcccgaggatgacgcagccagg
gcgaaacgggaagctgatcgcactatgaaccgcaatgcccgcaatgcatcgctcgacccc
gatgacggcatcgacctgtga

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (7)   

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