KEGG   Nicotiana sylvestris (wood tobacco): 104238692
Entry
104238692         CDS       T05026                                 
Name
(RefSeq) probable RNA helicase SDE3
  KO
K18422  helicase MOV-10 [EC:5.6.2.5]
Organism
nsy  Nicotiana sylvestris (wood tobacco)
Brite
KEGG Orthology (KO) [BR:nsy00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nsy03019]
    104238692
   03036 Chromosome and associated proteins [BR:nsy03036]
    104238692
Enzymes [BR:nsy01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.5  RNA 5'-3' helicase
     104238692
Messenger RNA biogenesis [BR:nsy03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     104238692
Chromosome and associated proteins [BR:nsy03036]
 Eukaryotic type
  Gene silencing
   microRNA pathway
    Other miRNA pathway proteins
     104238692
SSDB
Motif
Pfam: AAA_12 AAA_11 MOV-10_beta-barrel AAA_30 ResIII AAA_19 AAA_22 UvrD-helicase DEAD AAA_16 Helicase_RecD SLFN-g3_helicase Mov-10_helical ATPase_2 Flavi_DEAD
Other DBs
NCBI-GeneID: 104238692
NCBI-ProteinID: XP_009791431
UniProt: A0A1U7XP84
Position
Unknown
AA seq 952 aa
MGSVADKSDDEYSIITDKGDIGFVDFDRYKSACSYNPNGESEIVVISVPFPLIGGKPKSG
IVGETIVDSITIENTTNDSLELWSIKIYDSKPEDSFTLSLMKPPTPCSDMQYVQEFMESF
SLEDRMLRPGQTLTVWLSCKPKEIGLHTSAVHINVGDETVERLVFVLAEDKVSQSLASSR
PYYRDRKKKAPAVDVFAPNAFVVGSRPTRARNQGFRYRLPSYRIPGDIREMIEKEQFPDV
IGEGLRRDNYILYFRILLNIEEIKMEEDMRDYEMESATMKRRGPQFLSLDVPGLAERRPS
LVYGDYIFARLATADASETTPYQGYIHRVEAEEVYLKFDKEFHINHVAGNLYNVQFAFNR
TSVRRLHQAIEATESLNGEILFPSGISRARHIQAARLAPISCTLNKEQTTAVEKILGCKG
GAPYVIHGPPGTGKTRTLIEAILQLHVTRKDARVLVCAPSNSAADHILEKLVSQQNVEVK
DHEIFRLNALTRPLDDVNPSHIRFCNVEVDAFKCPLLRDLRRYRIIISTYASASLLYAEG
IKRGHFSHVFLDEAGQASEPETMVPLSHLLRNETVVVLAGDPLQLGPIVFSKDAENFGLG
TSYMERLFECQLYGDLNENYATRLVRNYRCHPAILQLPSEMFYGGELIACKEDDKASAQT
WVDLLPNKEFPLLFIGIQGCDEREGNNPSWFNRIEASKVVEIIRDLIENKGLKEEDIGVI
TPYRQQVLKIRKALESFDWANVKVGSVEQFQGQEREVIIISTVRSTVTHNDFDRIHYLGF
LSNPRRFNVAATRARSLLVVIGNPHIICKDPYWNKLLWYCADNGSYKGCFLPERLEILEE
DSGRANNWCDDGAQAKSWDCEGAQAKSWDCEGAQANDWDCEGAEAKSWDCEVAQVNNWDY
DQAKNWNDGGTCENEGKQNLQPSPEVQCGTVHQSEYIPDPVMDEAEWSDGWK
NT seq 2859 nt   +upstreamnt  +downstreamnt
atgggctcagttgctgataagtcggatgatgaatattcaataattactgataaaggagac
atcggattcgttgactttgacagatataaatcagcttgtagctacaatccaaatggagag
agcgagatagttgttatatctgttccatttccactgatagggggaaaacctaaatcagga
attgttggtgaaactattgtcgattcaatcacaatagagaataccactaatgattcgctg
gaactctggtcaattaagatttatgactcgaaacctgaggattcgttcactctatctctg
atgaaacctccaactccatgttccgacatgcaatatgttcaagaatttatggagtccttt
agcttagaggatagaatgctacgaccaggtcagacactaacagtgtggttgtcttgtaaa
ccgaaagaaattgggttgcacacatcagctgtgcatatcaatgttggcgatgagaccgta
gaaagattggtttttgtcctggctgaggataaggtctcgcagtcactagcttcgagcagg
ccatactacagagatagaaagaagaaagcaccagcagtagatgtttttgctcctaatgca
ttcgttgtgggttctcgtcctacaagggcacgaaatcaaggattcagatacagacttcct
tcatatcgcattcctggggatataagggaaatgatagagaaggaacagtttcctgatgtt
attggggaaggtttaagaagagataattacattctttattttagaattttactaaatatt
gaagaaatcaagatggaggaagacatgagggactatgaaatggagtccgccaccatgaag
cgaagggggcctcaatttttgtcccttgatgtcccagggctagctgagaggaggccgtca
cttgtttatggggattatatctttgcaaggctagctactgcagatgcaagtgagaccacc
ccttatcagggttatatccaccgagttgaggcggaagaagtgtatttgaagtttgataaa
gaattccacatcaaccatgttgctggaaatctttataatgtgcagtttgcattcaatcgt
acgagtgtgcggaggttacaccaagccattgaagctacagaaagcttaaatggagaaatt
ctctttccatcaggcatatccagagcaagacatatacaagctgccagactggcacctatt
tcatgtacgcttaacaaggagcagacgactgcagttgaaaagatccttgggtgcaaaggc
ggagctccatacgttatccatgggcctcctggtacaggcaaaacaaggactcttatagaa
gctattctccagctacacgttacgaggaaagatgctcgtgttctcgtctgcgcaccttca
aatagtgctgcagaccatatacttgagaaacttgtcagtcagcagaatgttgaagtgaag
gaccatgagatttttaggctgaatgcactcacacgtcctctagacgacgtgaatcctagt
cacattcgcttttgcaatgttgaagttgatgccttcaagtgtcctcttctcagggacctt
agaagatataggattattatatctacatatgctagtgcatctcttctttatgctgaaggt
attaaacggggacatttctctcacgttttcttggatgaggcaggacaggcatcggagcct
gaaaccatggttcctctgtcgcatcttttaaggaacgagacagtagtggtacttgctggt
gatccactgcaacttggtcccatagttttttcaaaagatgctgaaaattttgggttgggg
acgtcatatatggaaaggttatttgaatgccagttatatggtgatctcaacgaaaattat
gctaccagactagtaagaaactatcggtgtcatccagcaattctgcagcttccctcagaa
atgttttatggaggagagttgatcgcatgtaaagaagatgataaagcttctgctcagact
tgggtggacctgcttccaaacaaggaatttccgttgcttttcatcggcatccaaggttgt
gatgaaagggaaggaaacaacccatcatggttcaataggattgaggcaagcaaggtagta
gagatcataagggatctgatagagaacaaaggtctgaaagaggaagatattggggtgata
acaccttacagacaacaagtactgaaaatacgaaaagcccttgagagtttcgattgggct
aatgtaaaggtcggtagtgttgagcaattccaaggtcaggagagagaagttattattatc
tcgaccgtccgatcaactgtaacacacaatgattttgatagaatccactatttaggattt
ttaagcaatccgagaaggtttaatgttgctgctacaagagccagatcgttgcttgtagtt
attgggaatccacatatcatctgcaaggacccctactggaacaagcttttatggtattgt
gcagacaatggctcctataagggctgcttcttacctgaaagactggagatccttgaagag
gattctggacgagcaaataattggtgtgatgacggggctcaagcaaaaagttgggactgc
gaaggagcacaagcaaaaagttgggactgcgaaggggcacaagctaacgattgggactgt
gaaggagcagaagctaaaagttgggactgtgaagtagctcaagttaataattgggattat
gaccaagccaagaattggaatgacggaggcacctgtgaaaacgaagggaaacagaatctt
cagccatctccggaggttcaatgtggtacagttcaccagtcagaatacatcccagaccct
gttatggatgaagctgaatggtctgatggttggaaataa

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (15)   
   Pfam (15)   
All databases (28)   

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