KEGG   Nicotiana tabacum (common tobacco): 107807048
Entry
107807048         CDS       T04643                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24-like
  KO
K12835  ATP-dependent RNA helicase DDX42 [EC:5.6.2.7]
Organism
nta  Nicotiana tabacum (common tobacco)
Pathway
nta03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:nta00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107807048
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:nta03041]
    107807048
Enzymes [BR:nta01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     107807048
Spliceosome [BR:nta03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    107807048
 Complex B
    107807048
 Complex C
   U2 SnRNP specific factors
    107807048
SSDB
Motif
Pfam: DEAD Helicase_C ResIII
Other DBs
NCBI-GeneID: 107807048
NCBI-ProteinID: XP_016486811
UniProt: A0A1S4BD77
Position
Un
AA seq 762 aa
MSKRKFGFEGFGINKQTTYNFERNQAPQRLYVPPSLCSGGSHDNYEDTDLDNIEYEEHDA
VGEDNKNDGAGGGGGAEDDEIDPLDAFMEGIHEEMKAAAPPKPKEKLDKYKDDVEDDPME
SFLRAKKDVGLQLAAEALNAGYNSDEEVYAAAKAVDAGLVEYDSDDNPIVVDKKKIEPIP
ALEHSEIDYEAFNKDFYEEKPSISGMSDPEVNEYRSSLAIRVSGFDVPRPVKTFEDCGFS
VELMKAISKQGYEKPTPIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMVVHIMDQPEL
QKEEGPIGVICAPTRELAHQIFVEAKKFSKSHGIRVSAVYGGMSKLDQYKELKAGCEIVV
ATPGRLIDMLRKKAFTMLRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM
PRKVEKLAREILTDPVRVTVGEIGMANEDITQLVQVIPSDAEKLPWLLEKLPVLIDNGDV
LVFASKKATVDEIESQLAQKGFRVAALHGDKDQVSRMETLQKFKSGIYHVLIATDVAARG
LDIKSIKSVVNYDIAKDMDMHVHRIGRTGRAGDKDGTAYTLITQKEARFAGELANSLVAA
GQTVSIELMDLAMKDGRFRSKRDARKGGGKRAKGRGGGSNRGVRGVDFGLGIGYNSESNN
PPQNTAPSRSAAVNSLRTGMMAQFKSSFVAASSNSQNQGMNNTAGAYPNKGMVLQGFVSG
GTIGGESNASRISSTFTGANQKSSESSKEKSRERRRPSGWDR
NT seq 2289 nt   +upstreamnt  +downstreamnt
atgtcgaagagaaaattcggattcgaaggatttggaataaataagcaaacgacgtacaac
ttcgagcgaaatcaagctcctcagcgactgtacgtcccgccgtcgttatgctccggcggt
agccacgacaattacgaagacaccgacttagataacatcgagtacgaagaacacgatgcg
gtcggagaggacaacaaaaacgatggtgcaggaggaggaggcggcgccgaagatgatgag
atcgatccgctcgatgcatttatggaagggattcatgaggaaatgaaggcggcggcgcct
ccgaagccgaaggagaagcttgataagtataaggatgatgtagaggatgatccgatggag
agttttttaagagcgaagaaggacgtagggttacaattggctgctgaagctcttaacgct
ggttataattcggacgaggaggtttatgctgcggcgaaagctgttgatgcaggattggtt
gagtatgactctgatgataatcctattgttgttgataaaaagaagattgaacctattcct
gctttggaacatagtgagattgactatgaagccttcaacaaggacttttacgaggaaaag
ccttctatttcaggtatgagcgatccggaagttaatgaatataggtcaagcttggcaatt
cgtgtatcaggctttgatgttccaaggcctgttaagacatttgaagactgtggtttttca
gttgagttgatgaaagctatcagtaaacagggatatgagaagcctacaccaatacagtgt
caagcattgccgattgtgctctctgggagagatattattggtattgctaaaactgggtcc
ggcaagactgctgcttttgtgcttcctatggttgtccacattatggatcagcctgaactt
cagaaagaagaaggtcccattggagttatttgtgcacctactagggaattagcacatcaa
atatttgtggaggcaaagaaattctctaaatcgcatggtatccgtgtctctgcagtttat
ggaggaatgtctaaattggatcaatacaaagaactaaaggctggatgtgagattgttgtt
gctactccagggaggttgatagatatgcttagaaagaaggcatttacaatgttgagggca
acttacctagtacttgatgaggctgatcggatgtttgaccttggttttgagcctcagata
aggtccattgtcggtcaaattagacctgatcgtcaaacattgctcttttcagcaactatg
ccccgcaaagttgaaaagcttgccagagaaatattgacagatcctgtaagagttaccgtg
ggtgagattggcatggctaatgaggatattacacaattagttcaagtgattccttcggat
gctgaaaaattgccttggcttttggaaaagctccctgtactgatcgacaatggtgatgtt
cttgtctttgcttcgaagaaggcaacagtggatgagattgaatctcaactggctcagaag
ggattcagagttgcagctctccatggtgacaaggatcaagtttctcgtatggagacactg
caaaagtttaaatctggcatatatcatgttcttatcgcaactgatgttgctgcccgtggt
cttgacatcaaatcaattaagtcagtggtgaactatgacatagctaaagatatggacatg
catgttcacagaattgggagaacaggtcgtgctggtgacaaagatgggacggcctacact
cttattacacagaaggaagcgcgttttgctggtgaactggcgaacagtttggttgctgcc
ggtcaaactgtgtccatcgaactaatggaccttgctatgaaggatgggaggttccggtcc
aaaagggatgcaaggaaaggaggtggaaaaagggccaaaggaaggggaggaggaagcaat
agaggtgtacgaggtgtggattttggtctaggtattggatacaattctgaatcaaataac
cctccccagaacactgctccaagccgttctgcagcagttaattccctgaggacaggcatg
atggcacaatttaaaagtagctttgttgctgcatcatcaaattctcaaaatcaagggatg
aacaacacagctggtgcgtatccgaacaagggaatggtcttacagggcttcgtctctggt
gggacaattggtggagaaagtaatgcttcccgtattagttccacatttactggagctaac
cagaagagttcagagagttcaaaagagaagtctagagaaagacggaggccttctggttgg
gatcgttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (3)   
   Pfam (3)   
All databases (17)   

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